miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3578 3' -51.8 NC_001650.1 + 14141 0.66 0.992574
Target:  5'- gGGGGcuccaUGGUCCc-GGGGGUCcagGGGGg -3'
miRNA:   3'- -UCCC-----ACCAGGauCUCCCAGaaaUUCU- -5'
3578 3' -51.8 NC_001650.1 + 157220 0.66 0.987427
Target:  5'- cGGGUGGUCUUcuucacGGGGGaCUcgAAGGg -3'
miRNA:   3'- uCCCACCAGGAu-----CUCCCaGAaaUUCU- -5'
3578 3' -51.8 NC_001650.1 + 49577 0.66 0.987427
Target:  5'- cGGGGUGGUCuCUGugauGGGGG-Cg--GAGGu -3'
miRNA:   3'- -UCCCACCAG-GAU----CUCCCaGaaaUUCU- -5'
3578 3' -51.8 NC_001650.1 + 130071 0.66 0.991481
Target:  5'- gGGGGUGGagagggCCggGGAGGGgg---GAGAg -3'
miRNA:   3'- -UCCCACCa-----GGa-UCUCCCagaaaUUCU- -5'
3578 3' -51.8 NC_001650.1 + 152066 0.66 0.993553
Target:  5'- uGGaucUGGUCCUGGuuuGGGGUCUuccUUGGGu -3'
miRNA:   3'- uCCc--ACCAGGAUC---UCCCAGA---AAUUCu -5'
3578 3' -51.8 NC_001650.1 + 29393 0.66 0.993553
Target:  5'- cGGcGGUGG-CCUucgagauagAGGGGGUCaggAGGAg -3'
miRNA:   3'- -UC-CCACCaGGA---------UCUCCCAGaaaUUCU- -5'
3578 3' -51.8 NC_001650.1 + 56213 0.66 0.993553
Target:  5'- gGGGGUGGUUgUuagugggguGGGGGUUUgcaAAGAc -3'
miRNA:   3'- -UCCCACCAGgAu--------CUCCCAGAaa-UUCU- -5'
3578 3' -51.8 NC_001650.1 + 69151 0.66 0.992574
Target:  5'- cAGGGUGGUagCCagGGAGGGgggCggcguAGAg -3'
miRNA:   3'- -UCCCACCA--GGa-UCUCCCa--Gaaau-UCU- -5'
3578 3' -51.8 NC_001650.1 + 180848 0.66 0.992574
Target:  5'- gGGGGcuccaUGGUCCc-GGGGGUCcagGGGGg -3'
miRNA:   3'- -UCCC-----ACCAGGauCUCCCAGaaaUUCU- -5'
3578 3' -51.8 NC_001650.1 + 70768 0.66 0.993553
Target:  5'- uGGuGG-GGUCgUuGAGGGUCUUguAGAu -3'
miRNA:   3'- -UC-CCaCCAGgAuCUCCCAGAAauUCU- -5'
3578 3' -51.8 NC_001650.1 + 181594 0.66 0.991481
Target:  5'- cGGGUccgGGUCCgcgaGGAGGGggg--GAGAg -3'
miRNA:   3'- uCCCA---CCAGGa---UCUCCCagaaaUUCU- -5'
3578 3' -51.8 NC_001650.1 + 179033 0.66 0.987427
Target:  5'- uGGGUGuGUgCCaGGGGGGUUUggggUGGGGc -3'
miRNA:   3'- uCCCAC-CA-GGaUCUCCCAGAa---AUUCU- -5'
3578 3' -51.8 NC_001650.1 + 111682 0.66 0.991481
Target:  5'- gGGGGUGG-CCUGGGGuaUCUUg---- -3'
miRNA:   3'- -UCCCACCaGGAUCUCccAGAAauucu -5'
3578 3' -51.8 NC_001650.1 + 14887 0.66 0.991481
Target:  5'- cGGGUccgGGUCCgcgaGGAGGGggg--GAGAg -3'
miRNA:   3'- uCCCA---CCAGGa---UCUCCCagaaaUUCU- -5'
3578 3' -51.8 NC_001650.1 + 12326 0.66 0.987427
Target:  5'- uGGGUGuGUgCCaGGGGGGUUUggggUGGGGc -3'
miRNA:   3'- uCCCAC-CA-GGaUCUCCCAGAa---AUUCU- -5'
3578 3' -51.8 NC_001650.1 + 3096 0.66 0.987427
Target:  5'- uAGGGUGGg-CUAGGGGGUg------- -3'
miRNA:   3'- -UCCCACCagGAUCUCCCAgaaauucu -5'
3578 3' -51.8 NC_001650.1 + 169803 0.66 0.987427
Target:  5'- uAGGGUGGg-CUAGGGGGUg------- -3'
miRNA:   3'- -UCCCACCagGAUCUCCCAgaaauucu -5'
3578 3' -51.8 NC_001650.1 + 97138 0.66 0.98863
Target:  5'- -cGGUGGUCUacccgggggaggAGAGGGUCUUUu--- -3'
miRNA:   3'- ucCCACCAGGa-----------UCUCCCAGAAAuucu -5'
3578 3' -51.8 NC_001650.1 + 175532 0.67 0.98399
Target:  5'- uGGG-GGUCUgguggguguGGGGGUCcUUGGGAu -3'
miRNA:   3'- uCCCaCCAGGau-------CUCCCAGaAAUUCU- -5'
3578 3' -51.8 NC_001650.1 + 74580 0.67 0.977558
Target:  5'- cAGGGUGG-CCUcGGAGaGGUag--GAGAa -3'
miRNA:   3'- -UCCCACCaGGA-UCUC-CCAgaaaUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.