miRNA display CGI


Results 41 - 60 of 262 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3578 5' -57.2 NC_001650.1 + 79038 0.66 0.882906
Target:  5'- gGCCUCCcgGGAGAgCCCUCUGGA-GAGGAu -3'
miRNA:   3'- -UGGGGG--UUUCU-GGGGGGCCUgUUUCU- -5'
3578 5' -57.2 NC_001650.1 + 164898 0.66 0.882906
Target:  5'- cGCCgCCAccccACCCCCCGGGCc---- -3'
miRNA:   3'- -UGGgGGUuuc-UGGGGGGCCUGuuucu -5'
3578 5' -57.2 NC_001650.1 + 134327 0.66 0.882906
Target:  5'- cCCCCCGgcGcCCCCCgCGGGCc---- -3'
miRNA:   3'- uGGGGGUuuCuGGGGG-GCCUGuuucu -5'
3578 5' -57.2 NC_001650.1 + 131580 0.66 0.882906
Target:  5'- cACCCCCA---GCCUCuuGGcCAGAGu -3'
miRNA:   3'- -UGGGGGUuucUGGGGggCCuGUUUCu -5'
3578 5' -57.2 NC_001650.1 + 120205 0.66 0.882906
Target:  5'- cGCCCCCcuacAGGCagCCCCUGuACGGGGAg -3'
miRNA:   3'- -UGGGGGuu--UCUG--GGGGGCcUGUUUCU- -5'
3578 5' -57.2 NC_001650.1 + 171435 0.66 0.882906
Target:  5'- -gCUCCGGAGGCCCuccgugCCCGGcuCGGGGAa -3'
miRNA:   3'- ugGGGGUUUCUGGG------GGGCCu-GUUUCU- -5'
3578 5' -57.2 NC_001650.1 + 30393 0.66 0.882906
Target:  5'- gACCCCC-AGGGCCUCgCGGGuguucUGGAGGa -3'
miRNA:   3'- -UGGGGGuUUCUGGGGgGCCU-----GUUUCU- -5'
3578 5' -57.2 NC_001650.1 + 4728 0.66 0.882906
Target:  5'- -gCUCCGGAGGCCCuccgugCCCGGcuCGGGGAa -3'
miRNA:   3'- ugGGGGUUUCUGGG------GGGCCu-GUUUCU- -5'
3578 5' -57.2 NC_001650.1 + 89490 0.66 0.882906
Target:  5'- cACCCUCAgGAGgucgugccuGCCCUCUGGGCAcAGGc -3'
miRNA:   3'- -UGGGGGU-UUC---------UGGGGGGCCUGUuUCU- -5'
3578 5' -57.2 NC_001650.1 + 59951 0.66 0.882221
Target:  5'- cGCCCCCGGgggccacGGGCCCCUC-GACGc--- -3'
miRNA:   3'- -UGGGGGUU-------UCUGGGGGGcCUGUuucu -5'
3578 5' -57.2 NC_001650.1 + 136664 0.66 0.875958
Target:  5'- gGCCCUgugCGAGGGCCUgCgcgUGGGCGAGGAg -3'
miRNA:   3'- -UGGGG---GUUUCUGGGgG---GCCUGUUUCU- -5'
3578 5' -57.2 NC_001650.1 + 23581 0.66 0.875958
Target:  5'- aGCCuggCCCu--GGCCCCCauagccaGGAUAGAGGa -3'
miRNA:   3'- -UGG---GGGuuuCUGGGGGg------CCUGUUUCU- -5'
3578 5' -57.2 NC_001650.1 + 122659 0.66 0.875958
Target:  5'- gACUUCCAggcggucaagGAGACCCuCCUGGGCugccuGAGGc -3'
miRNA:   3'- -UGGGGGU----------UUCUGGG-GGGCCUGu----UUCU- -5'
3578 5' -57.2 NC_001650.1 + 100893 0.67 0.8688
Target:  5'- aGCCCCCGAAGcCCUUCUGcAUAGAGc -3'
miRNA:   3'- -UGGGGGUUUCuGGGGGGCcUGUUUCu -5'
3578 5' -57.2 NC_001650.1 + 79394 0.67 0.8688
Target:  5'- cGCgCCCCGucG-CgCCCCCGGGCGGc-- -3'
miRNA:   3'- -UG-GGGGUuuCuG-GGGGGCCUGUUucu -5'
3578 5' -57.2 NC_001650.1 + 108388 0.67 0.8688
Target:  5'- cCCCCCGAGGAgCCCaucaucaCGGgguucauagACGAGGGg -3'
miRNA:   3'- uGGGGGUUUCUgGGGg------GCC---------UGUUUCU- -5'
3578 5' -57.2 NC_001650.1 + 1264 0.67 0.8688
Target:  5'- cGCCCCCc-GGGCCCCCauuGGCu-AGAu -3'
miRNA:   3'- -UGGGGGuuUCUGGGGGgc-CUGuuUCU- -5'
3578 5' -57.2 NC_001650.1 + 175038 0.67 0.8688
Target:  5'- cACCCCCAuAGcccccACCaCCCCGGGgGu-GAa -3'
miRNA:   3'- -UGGGGGUuUC-----UGG-GGGGCCUgUuuCU- -5'
3578 5' -57.2 NC_001650.1 + 8331 0.67 0.8688
Target:  5'- cACCCCCAuAGcccccACCaCCCCGGGgGu-GAa -3'
miRNA:   3'- -UGGGGGUuUC-----UGG-GGGGCCUgUuuCU- -5'
3578 5' -57.2 NC_001650.1 + 111545 0.67 0.8688
Target:  5'- gGCCCUCAggaugggcAGGGCCUCCaGGGgAAAGGg -3'
miRNA:   3'- -UGGGGGU--------UUCUGGGGGgCCUgUUUCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.