miRNA display CGI


Results 21 - 40 of 262 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3578 5' -57.2 NC_001650.1 + 124624 0.66 0.902457
Target:  5'- cACCuUCCGAccacaAGAgaCCCCGGugAGAGAu -3'
miRNA:   3'- -UGG-GGGUU-----UCUggGGGGCCugUUUCU- -5'
3578 5' -57.2 NC_001650.1 + 89379 0.66 0.902457
Target:  5'- -gCCCCGGAG---CCCCGGGCAcAGGa -3'
miRNA:   3'- ugGGGGUUUCuggGGGGCCUGUuUCU- -5'
3578 5' -57.2 NC_001650.1 + 84746 0.66 0.902457
Target:  5'- uUCUCCAauuuucucAAGGCCCgCCgGGugAGGGAg -3'
miRNA:   3'- uGGGGGU--------UUCUGGG-GGgCCugUUUCU- -5'
3578 5' -57.2 NC_001650.1 + 107170 0.66 0.901837
Target:  5'- cGCCUCCGuGGugaccgcGCCCCCCaGGGCcgccAGGGAa -3'
miRNA:   3'- -UGGGGGUuUC-------UGGGGGG-CCUG----UUUCU- -5'
3578 5' -57.2 NC_001650.1 + 62765 0.66 0.89616
Target:  5'- gUCUUCAAAGuCgCUCUCGGACGAGGAc -3'
miRNA:   3'- uGGGGGUUUCuG-GGGGGCCUGUUUCU- -5'
3578 5' -57.2 NC_001650.1 + 131331 0.66 0.89616
Target:  5'- cGCCaguCUCAGGGGCgCCCCGGAgGGAc- -3'
miRNA:   3'- -UGG---GGGUUUCUGgGGGGCCUgUUUcu -5'
3578 5' -57.2 NC_001650.1 + 54588 0.66 0.89616
Target:  5'- gACCCCCGGcacgcuaCCCCUGGAUuuuGGAc -3'
miRNA:   3'- -UGGGGGUUucug---GGGGGCCUGuu-UCU- -5'
3578 5' -57.2 NC_001650.1 + 155844 0.66 0.89616
Target:  5'- uCCUCCAGGGACCCCgCGucCAGc-- -3'
miRNA:   3'- uGGGGGUUUCUGGGGgGCcuGUUucu -5'
3578 5' -57.2 NC_001650.1 + 111075 0.66 0.89616
Target:  5'- -aCCCCAGGGGCUCCagCGGcgccaggcGCGAGGGc -3'
miRNA:   3'- ugGGGGUUUCUGGGGg-GCC--------UGUUUCU- -5'
3578 5' -57.2 NC_001650.1 + 129397 0.66 0.895518
Target:  5'- cUCCCCuuAGACCCCuucuccagcuugaCCgccuccgagaGGGCGAAGAg -3'
miRNA:   3'- uGGGGGuuUCUGGGG-------------GG----------CCUGUUUCU- -5'
3578 5' -57.2 NC_001650.1 + 24384 0.66 0.895518
Target:  5'- cACCUCCAGcgcGACCCCgggggucUCGGACGucAGAa -3'
miRNA:   3'- -UGGGGGUUu--CUGGGG-------GGCCUGUu-UCU- -5'
3578 5' -57.2 NC_001650.1 + 68817 0.66 0.889642
Target:  5'- gGCCCUCGcucgaggggcGGGGCgCCUCGGACGGGa- -3'
miRNA:   3'- -UGGGGGU----------UUCUGgGGGGCCUGUUUcu -5'
3578 5' -57.2 NC_001650.1 + 57047 0.66 0.889642
Target:  5'- gGCCCagCAAGGGUCUCCCGGcgucacccucuGCGAGGAa -3'
miRNA:   3'- -UGGGg-GUUUCUGGGGGGCC-----------UGUUUCU- -5'
3578 5' -57.2 NC_001650.1 + 141062 0.66 0.889642
Target:  5'- gACCCUgGAAauCCCCCCGuGACucacGGAGAc -3'
miRNA:   3'- -UGGGGgUUUcuGGGGGGC-CUG----UUUCU- -5'
3578 5' -57.2 NC_001650.1 + 23393 0.66 0.889642
Target:  5'- aACCCUCGGcGGGCCCCCCuuccucGAUGGAGc -3'
miRNA:   3'- -UGGGGGUU-UCUGGGGGGc-----CUGUUUCu -5'
3578 5' -57.2 NC_001650.1 + 71417 0.66 0.889642
Target:  5'- gGCCCCCGagcgcaugGAGGCCCa-CGGGCucGAGu -3'
miRNA:   3'- -UGGGGGU--------UUCUGGGggGCCUGu-UUCu -5'
3578 5' -57.2 NC_001650.1 + 111484 0.66 0.889642
Target:  5'- -aCCCCAGGccaCCCCCGGGCugguGAu -3'
miRNA:   3'- ugGGGGUUUcugGGGGGCCUGuuu-CU- -5'
3578 5' -57.2 NC_001650.1 + 116016 0.66 0.888978
Target:  5'- gGCCUCCcuaaaGAGGGCCCCUauccacuCGGGgGAGGGc -3'
miRNA:   3'- -UGGGGG-----UUUCUGGGGG-------GCCUgUUUCU- -5'
3578 5' -57.2 NC_001650.1 + 97158 0.66 0.888978
Target:  5'- gGCCaaaCUGAGGACCUcuacgguggucuaCCCGGGgGAGGAg -3'
miRNA:   3'- -UGGg--GGUUUCUGGG-------------GGGCCUgUUUCU- -5'
3578 5' -57.2 NC_001650.1 + 56645 0.66 0.887644
Target:  5'- gGCCUCCuagcuGACCCCCCcgcgcaguagccauGGGCuaAAAGGg -3'
miRNA:   3'- -UGGGGGuuu--CUGGGGGG--------------CCUG--UUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.