miRNA display CGI


Results 21 - 40 of 262 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3578 5' -57.2 NC_001650.1 + 8331 0.67 0.8688
Target:  5'- cACCCCCAuAGcccccACCaCCCCGGGgGu-GAa -3'
miRNA:   3'- -UGGGGGUuUC-----UGG-GGGGCCUgUuuCU- -5'
3578 5' -57.2 NC_001650.1 + 9130 0.69 0.758614
Target:  5'- gGCCCCauGGGACUCCCCcguggcuGGGCaAGAGAg -3'
miRNA:   3'- -UGGGGguUUCUGGGGGG-------CCUG-UUUCU- -5'
3578 5' -57.2 NC_001650.1 + 10377 0.72 0.5822
Target:  5'- cACCCgCAuuuGAGACCCCCgGGAgGAuGGAc -3'
miRNA:   3'- -UGGGgGU---UUCUGGGGGgCCUgUU-UCU- -5'
3578 5' -57.2 NC_001650.1 + 12296 0.71 0.622147
Target:  5'- cCUCCCAGGGACCCCCauGuACaAGAGAg -3'
miRNA:   3'- uGGGGGUUUCUGGGGGgcC-UG-UUUCU- -5'
3578 5' -57.2 NC_001650.1 + 13890 0.7 0.682126
Target:  5'- aACUCCCAuccuuacAGGCuuCCCCCGGAgAGAGGn -3'
miRNA:   3'- -UGGGGGUu------UCUG--GGGGGCCUgUUUCU- -5'
3578 5' -57.2 NC_001650.1 + 13925 0.83 0.148839
Target:  5'- cGCCCCCcuGGACCCCCgGGACcauGGAg -3'
miRNA:   3'- -UGGGGGuuUCUGGGGGgCCUGuu-UCU- -5'
3578 5' -57.2 NC_001650.1 + 14158 0.68 0.81332
Target:  5'- gACCCC---GGACUCCCUGGACccacauGGAc -3'
miRNA:   3'- -UGGGGguuUCUGGGGGGCCUGuu----UCU- -5'
3578 5' -57.2 NC_001650.1 + 14328 0.67 0.838187
Target:  5'- gACCCCCAcauGGACCCuugCCCacuuGGACAu--- -3'
miRNA:   3'- -UGGGGGUu--UCUGGG---GGG----CCUGUuucu -5'
3578 5' -57.2 NC_001650.1 + 14437 0.66 0.90853
Target:  5'- cCCCCCuuGGACCCCUgccaccccccuUGGACc---- -3'
miRNA:   3'- uGGGGGuuUCUGGGGG-----------GCCUGuuucu -5'
3578 5' -57.2 NC_001650.1 + 14499 0.8 0.236956
Target:  5'- aACCCCCuuGGACCCCC-GGACAccuuGGAu -3'
miRNA:   3'- -UGGGGGuuUCUGGGGGgCCUGUu---UCU- -5'
3578 5' -57.2 NC_001650.1 + 15109 0.66 0.907933
Target:  5'- cACCCCCGuuGGGCCguggCCUGGugagaagACAAAGAu -3'
miRNA:   3'- -UGGGGGUu-UCUGGg---GGGCC-------UGUUUCU- -5'
3578 5' -57.2 NC_001650.1 + 17971 0.69 0.763275
Target:  5'- cACCCCCGGGGgugaagaagagcGCCCCCCacguggGGGCGcucugccaguaugggGAGAg -3'
miRNA:   3'- -UGGGGGUUUC------------UGGGGGG------CCUGU---------------UUCU- -5'
3578 5' -57.2 NC_001650.1 + 21836 0.68 0.821777
Target:  5'- cACCCCCAuccccAAGAUCCUCgCGGugAGc-- -3'
miRNA:   3'- -UGGGGGU-----UUCUGGGGG-GCCugUUucu -5'
3578 5' -57.2 NC_001650.1 + 21840 0.68 0.830068
Target:  5'- -aCCCCA---GCCCCgCGGGCAGcucAGAg -3'
miRNA:   3'- ugGGGGUuucUGGGGgGCCUGUU---UCU- -5'
3578 5' -57.2 NC_001650.1 + 21981 0.69 0.750158
Target:  5'- cGCCCCuCGGGGA--CCCCGGGgAGAGGc -3'
miRNA:   3'- -UGGGG-GUUUCUggGGGGCCUgUUUCU- -5'
3578 5' -57.2 NC_001650.1 + 22802 0.69 0.759548
Target:  5'- cGCCCaacaUAAAGACCgaggcgccgccgCCCCGGACGGGcGAc -3'
miRNA:   3'- -UGGGg---GUUUCUGG------------GGGGCCUGUUU-CU- -5'
3578 5' -57.2 NC_001650.1 + 23393 0.66 0.889642
Target:  5'- aACCCUCGGcGGGCCCCCCuuccucGAUGGAGc -3'
miRNA:   3'- -UGGGGGUU-UCUGGGGGGc-----CUGUUUCu -5'
3578 5' -57.2 NC_001650.1 + 23440 0.81 0.1816
Target:  5'- gAUCCCCAgcAGGACCUCCCGGGCGuccGAGGg -3'
miRNA:   3'- -UGGGGGU--UUCUGGGGGGCCUGU---UUCU- -5'
3578 5' -57.2 NC_001650.1 + 23581 0.66 0.875958
Target:  5'- aGCCuggCCCu--GGCCCCCauagccaGGAUAGAGGa -3'
miRNA:   3'- -UGG---GGGuuuCUGGGGGg------CCUGUUUCU- -5'
3578 5' -57.2 NC_001650.1 + 23971 0.68 0.830068
Target:  5'- cGCCCCCcucGGGcgggucuccGCCCCCCGcGcgccGCGAGGAc -3'
miRNA:   3'- -UGGGGGu--UUC---------UGGGGGGC-C----UGUUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.