miRNA display CGI


Results 21 - 40 of 262 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3578 5' -57.2 NC_001650.1 + 134777 0.75 0.414001
Target:  5'- -gCCCCAGAGGCagaCCUCaCGGACGAGGAc -3'
miRNA:   3'- ugGGGGUUUCUG---GGGG-GCCUGUUUCU- -5'
3578 5' -57.2 NC_001650.1 + 53146 0.75 0.431281
Target:  5'- aACCCCC---GGCCCCuCCGGGCGccGGGAu -3'
miRNA:   3'- -UGGGGGuuuCUGGGG-GGCCUGU--UUCU- -5'
3578 5' -57.2 NC_001650.1 + 107326 0.75 0.440077
Target:  5'- uCCCCCAcgGAGACCCCCgGGgGCAGc-- -3'
miRNA:   3'- uGGGGGU--UUCUGGGGGgCC-UGUUucu -5'
3578 5' -57.2 NC_001650.1 + 127191 0.74 0.457972
Target:  5'- cCCCCCAucGGCCCcggucuCCCGGGCGGcGGAg -3'
miRNA:   3'- uGGGGGUuuCUGGG------GGGCCUGUU-UCU- -5'
3578 5' -57.2 NC_001650.1 + 100439 0.74 0.467064
Target:  5'- cCUCCCAGGGGCCCCC-GGACGGc-- -3'
miRNA:   3'- uGGGGGUUUCUGGGGGgCCUGUUucu -5'
3578 5' -57.2 NC_001650.1 + 172542 0.74 0.494879
Target:  5'- gGCCCCCu-AGGCCCCCauuGGGCcauuGGGAu -3'
miRNA:   3'- -UGGGGGuuUCUGGGGGg--CCUGu---UUCU- -5'
3578 5' -57.2 NC_001650.1 + 5835 0.74 0.494879
Target:  5'- gGCCCCCu-AGGCCCCCauuGGGCcauuGGGAu -3'
miRNA:   3'- -UGGGGGuuUCUGGGGGg--CCUGu---UUCU- -5'
3578 5' -57.2 NC_001650.1 + 132931 0.73 0.504319
Target:  5'- aGCCgCCCGAGGGuCCCCCCGcGGCGc--- -3'
miRNA:   3'- -UGG-GGGUUUCU-GGGGGGC-CUGUuucu -5'
3578 5' -57.2 NC_001650.1 + 159930 0.73 0.504319
Target:  5'- gGCCCCCAacaaacacucaaGAGACCCCCCcaACAAAc- -3'
miRNA:   3'- -UGGGGGU------------UUCUGGGGGGccUGUUUcu -5'
3578 5' -57.2 NC_001650.1 + 125226 0.73 0.504319
Target:  5'- cGCCCCC-GGGACCCCCuCuGGCGaucGAGAg -3'
miRNA:   3'- -UGGGGGuUUCUGGGGG-GcCUGU---UUCU- -5'
3578 5' -57.2 NC_001650.1 + 131547 0.73 0.508116
Target:  5'- gGCCCCCGGccGGGCCCaCCCgcgggugcgucucggGGAgGAAGAg -3'
miRNA:   3'- -UGGGGGUU--UCUGGG-GGG---------------CCUgUUUCU- -5'
3578 5' -57.2 NC_001650.1 + 102665 0.73 0.513835
Target:  5'- gGCCCCuCAAccuGACCaCCCGGAcCGAAGAc -3'
miRNA:   3'- -UGGGG-GUUu--CUGGgGGGCCU-GUUUCU- -5'
3578 5' -57.2 NC_001650.1 + 165957 0.73 0.533081
Target:  5'- gGCCCCCcuAGGCCuaagagccgCCCCGGGCcccccGAGAa -3'
miRNA:   3'- -UGGGGGuuUCUGG---------GGGGCCUGu----UUCU- -5'
3578 5' -57.2 NC_001650.1 + 136639 0.73 0.533081
Target:  5'- gGCgCCCuGAGGCUCCgCGGGCAGAGu -3'
miRNA:   3'- -UGgGGGuUUCUGGGGgGCCUGUUUCu -5'
3578 5' -57.2 NC_001650.1 + 28863 0.73 0.542801
Target:  5'- uCCCCCuuGGGggUCCCCCuGACAAAGGc -3'
miRNA:   3'- uGGGGGuuUCU--GGGGGGcCUGUUUCU- -5'
3578 5' -57.2 NC_001650.1 + 85240 0.73 0.546705
Target:  5'- uACCCCCucAG-CCCCCUGGccuucggccucagguGCGAGGAc -3'
miRNA:   3'- -UGGGGGuuUCuGGGGGGCC---------------UGUUUCU- -5'
3578 5' -57.2 NC_001650.1 + 888 0.72 0.562407
Target:  5'- cACCCCC---GGCCCCCCauuGGucACAAAGAg -3'
miRNA:   3'- -UGGGGGuuuCUGGGGGG---CC--UGUUUCU- -5'
3578 5' -57.2 NC_001650.1 + 6690 0.72 0.562407
Target:  5'- uACCCCCuc-GGCCCCCauuGGGCcAAGGg -3'
miRNA:   3'- -UGGGGGuuuCUGGGGGg--CCUGuUUCU- -5'
3578 5' -57.2 NC_001650.1 + 167595 0.72 0.562407
Target:  5'- cACCCCC---GGCCCCCCauuGGucACAAAGAg -3'
miRNA:   3'- -UGGGGGuuuCUGGGGGG---CC--UGUUUCU- -5'
3578 5' -57.2 NC_001650.1 + 173397 0.72 0.562407
Target:  5'- uACCCCCuc-GGCCCCCauuGGGCcAAGGg -3'
miRNA:   3'- -UGGGGGuuuCUGGGGGg--CCUGuUUCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.