Results 21 - 40 of 262 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3578 | 5' | -57.2 | NC_001650.1 | + | 84746 | 0.66 | 0.902457 |
Target: 5'- uUCUCCAauuuucucAAGGCCCgCCgGGugAGGGAg -3' miRNA: 3'- uGGGGGU--------UUCUGGG-GGgCCugUUUCU- -5' |
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3578 | 5' | -57.2 | NC_001650.1 | + | 102623 | 0.66 | 0.902457 |
Target: 5'- cCCCCCAGuccagcccAGAgCCUgCaGACGAAGAg -3' miRNA: 3'- uGGGGGUU--------UCUgGGGgGcCUGUUUCU- -5' |
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3578 | 5' | -57.2 | NC_001650.1 | + | 164898 | 0.66 | 0.882906 |
Target: 5'- cGCCgCCAccccACCCCCCGGGCc---- -3' miRNA: 3'- -UGGgGGUuuc-UGGGGGGCCUGuuucu -5' |
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3578 | 5' | -57.2 | NC_001650.1 | + | 111075 | 0.66 | 0.89616 |
Target: 5'- -aCCCCAGGGGCUCCagCGGcgccaggcGCGAGGGc -3' miRNA: 3'- ugGGGGUUUCUGGGGg-GCC--------UGUUUCU- -5' |
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3578 | 5' | -57.2 | NC_001650.1 | + | 122659 | 0.66 | 0.875958 |
Target: 5'- gACUUCCAggcggucaagGAGACCCuCCUGGGCugccuGAGGc -3' miRNA: 3'- -UGGGGGU----------UUCUGGG-GGGCCUGu----UUCU- -5' |
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3578 | 5' | -57.2 | NC_001650.1 | + | 62765 | 0.66 | 0.89616 |
Target: 5'- gUCUUCAAAGuCgCUCUCGGACGAGGAc -3' miRNA: 3'- uGGGGGUUUCuG-GGGGGCCUGUUUCU- -5' |
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3578 | 5' | -57.2 | NC_001650.1 | + | 24384 | 0.66 | 0.895518 |
Target: 5'- cACCUCCAGcgcGACCCCgggggucUCGGACGucAGAa -3' miRNA: 3'- -UGGGGGUUu--CUGGGG-------GGCCUGUu-UCU- -5' |
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3578 | 5' | -57.2 | NC_001650.1 | + | 134327 | 0.66 | 0.882906 |
Target: 5'- cCCCCCGgcGcCCCCCgCGGGCc---- -3' miRNA: 3'- uGGGGGUuuCuGGGGG-GCCUGuuucu -5' |
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3578 | 5' | -57.2 | NC_001650.1 | + | 4728 | 0.66 | 0.882906 |
Target: 5'- -gCUCCGGAGGCCCuccgugCCCGGcuCGGGGAa -3' miRNA: 3'- ugGGGGUUUCUGGG------GGGCCu-GUUUCU- -5' |
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3578 | 5' | -57.2 | NC_001650.1 | + | 23581 | 0.66 | 0.875958 |
Target: 5'- aGCCuggCCCu--GGCCCCCauagccaGGAUAGAGGa -3' miRNA: 3'- -UGG---GGGuuuCUGGGGGg------CCUGUUUCU- -5' |
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3578 | 5' | -57.2 | NC_001650.1 | + | 116016 | 0.66 | 0.888978 |
Target: 5'- gGCCUCCcuaaaGAGGGCCCCUauccacuCGGGgGAGGGc -3' miRNA: 3'- -UGGGGG-----UUUCUGGGGG-------GCCUgUUUCU- -5' |
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3578 | 5' | -57.2 | NC_001650.1 | + | 97158 | 0.66 | 0.888978 |
Target: 5'- gGCCaaaCUGAGGACCUcuacgguggucuaCCCGGGgGAGGAg -3' miRNA: 3'- -UGGg--GGUUUCUGGG-------------GGGCCUgUUUCU- -5' |
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3578 | 5' | -57.2 | NC_001650.1 | + | 120205 | 0.66 | 0.882906 |
Target: 5'- cGCCCCCcuacAGGCagCCCCUGuACGGGGAg -3' miRNA: 3'- -UGGGGGuu--UCUG--GGGGGCcUGUUUCU- -5' |
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3578 | 5' | -57.2 | NC_001650.1 | + | 89490 | 0.66 | 0.882906 |
Target: 5'- cACCCUCAgGAGgucgugccuGCCCUCUGGGCAcAGGc -3' miRNA: 3'- -UGGGGGU-UUC---------UGGGGGGCCUGUuUCU- -5' |
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3578 | 5' | -57.2 | NC_001650.1 | + | 79038 | 0.66 | 0.882906 |
Target: 5'- gGCCUCCcgGGAGAgCCCUCUGGA-GAGGAu -3' miRNA: 3'- -UGGGGG--UUUCU-GGGGGGCCUgUUUCU- -5' |
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3578 | 5' | -57.2 | NC_001650.1 | + | 155844 | 0.66 | 0.89616 |
Target: 5'- uCCUCCAGGGACCCCgCGucCAGc-- -3' miRNA: 3'- uGGGGGUUUCUGGGGgGCcuGUUucu -5' |
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3578 | 5' | -57.2 | NC_001650.1 | + | 172383 | 0.66 | 0.90853 |
Target: 5'- aGCCCCCAuuGGCCCUCUGuGGg----- -3' miRNA: 3'- -UGGGGGUuuCUGGGGGGC-CUguuucu -5' |
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3578 | 5' | -57.2 | NC_001650.1 | + | 71417 | 0.66 | 0.889642 |
Target: 5'- gGCCCCCGagcgcaugGAGGCCCa-CGGGCucGAGu -3' miRNA: 3'- -UGGGGGU--------UUCUGGGggGCCUGu-UUCu -5' |
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3578 | 5' | -57.2 | NC_001650.1 | + | 136664 | 0.66 | 0.875958 |
Target: 5'- gGCCCUgugCGAGGGCCUgCgcgUGGGCGAGGAg -3' miRNA: 3'- -UGGGG---GUUUCUGGGgG---GCCUGUUUCU- -5' |
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3578 | 5' | -57.2 | NC_001650.1 | + | 124624 | 0.66 | 0.902457 |
Target: 5'- cACCuUCCGAccacaAGAgaCCCCGGugAGAGAu -3' miRNA: 3'- -UGG-GGGUU-----UCUggGGGGCCugUUUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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