miRNA display CGI


Results 1 - 20 of 262 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3578 5' -57.2 NC_001650.1 + 84746 0.66 0.902457
Target:  5'- uUCUCCAauuuucucAAGGCCCgCCgGGugAGGGAg -3'
miRNA:   3'- uGGGGGU--------UUCUGGG-GGgCCugUUUCU- -5'
3578 5' -57.2 NC_001650.1 + 122659 0.66 0.875958
Target:  5'- gACUUCCAggcggucaagGAGACCCuCCUGGGCugccuGAGGc -3'
miRNA:   3'- -UGGGGGU----------UUCUGGG-GGGCCUGu----UUCU- -5'
3578 5' -57.2 NC_001650.1 + 141062 0.66 0.889642
Target:  5'- gACCCUgGAAauCCCCCCGuGACucacGGAGAc -3'
miRNA:   3'- -UGGGGgUUUcuGGGGGGC-CUG----UUUCU- -5'
3578 5' -57.2 NC_001650.1 + 26774 0.66 0.910896
Target:  5'- aGCCCCgagagCAGGGgcagcgagaacaccuGCCCCCCGcGugGAGGu -3'
miRNA:   3'- -UGGGG-----GUUUC---------------UGGGGGGC-CugUUUCu -5'
3578 5' -57.2 NC_001650.1 + 134327 0.66 0.882906
Target:  5'- cCCCCCGgcGcCCCCCgCGGGCc---- -3'
miRNA:   3'- uGGGGGUuuCuGGGGG-GCCUGuuucu -5'
3578 5' -57.2 NC_001650.1 + 171435 0.66 0.882906
Target:  5'- -gCUCCGGAGGCCCuccgugCCCGGcuCGGGGAa -3'
miRNA:   3'- ugGGGGUUUCUGGG------GGGCCu-GUUUCU- -5'
3578 5' -57.2 NC_001650.1 + 155844 0.66 0.89616
Target:  5'- uCCUCCAGGGACCCCgCGucCAGc-- -3'
miRNA:   3'- uGGGGGUUUCUGGGGgGCcuGUUucu -5'
3578 5' -57.2 NC_001650.1 + 23581 0.66 0.875958
Target:  5'- aGCCuggCCCu--GGCCCCCauagccaGGAUAGAGGa -3'
miRNA:   3'- -UGG---GGGuuuCUGGGGGg------CCUGUUUCU- -5'
3578 5' -57.2 NC_001650.1 + 164898 0.66 0.882906
Target:  5'- cGCCgCCAccccACCCCCCGGGCc---- -3'
miRNA:   3'- -UGGgGGUuuc-UGGGGGGCCUGuuucu -5'
3578 5' -57.2 NC_001650.1 + 23393 0.66 0.889642
Target:  5'- aACCCUCGGcGGGCCCCCCuuccucGAUGGAGc -3'
miRNA:   3'- -UGGGGGUU-UCUGGGGGGc-----CUGUUUCu -5'
3578 5' -57.2 NC_001650.1 + 79038 0.66 0.882906
Target:  5'- gGCCUCCcgGGAGAgCCCUCUGGA-GAGGAu -3'
miRNA:   3'- -UGGGGG--UUUCU-GGGGGGCCUgUUUCU- -5'
3578 5' -57.2 NC_001650.1 + 71417 0.66 0.889642
Target:  5'- gGCCCCCGagcgcaugGAGGCCCa-CGGGCucGAGu -3'
miRNA:   3'- -UGGGGGU--------UUCUGGGggGCCUGu-UUCu -5'
3578 5' -57.2 NC_001650.1 + 54588 0.66 0.89616
Target:  5'- gACCCCCGGcacgcuaCCCCUGGAUuuuGGAc -3'
miRNA:   3'- -UGGGGGUUucug---GGGGGCCUGuu-UCU- -5'
3578 5' -57.2 NC_001650.1 + 111484 0.66 0.889642
Target:  5'- -aCCCCAGGccaCCCCCGGGCugguGAu -3'
miRNA:   3'- ugGGGGUUUcugGGGGGCCUGuuu-CU- -5'
3578 5' -57.2 NC_001650.1 + 102623 0.66 0.902457
Target:  5'- cCCCCCAGuccagcccAGAgCCUgCaGACGAAGAg -3'
miRNA:   3'- uGGGGGUU--------UCUgGGGgGcCUGUUUCU- -5'
3578 5' -57.2 NC_001650.1 + 68817 0.66 0.889642
Target:  5'- gGCCCUCGcucgaggggcGGGGCgCCUCGGACGGGa- -3'
miRNA:   3'- -UGGGGGU----------UUCUGgGGGGCCUGUUUcu -5'
3578 5' -57.2 NC_001650.1 + 111075 0.66 0.89616
Target:  5'- -aCCCCAGGGGCUCCagCGGcgccaggcGCGAGGGc -3'
miRNA:   3'- ugGGGGUUUCUGGGGg-GCC--------UGUUUCU- -5'
3578 5' -57.2 NC_001650.1 + 56645 0.66 0.887644
Target:  5'- gGCCUCCuagcuGACCCCCCcgcgcaguagccauGGGCuaAAAGGg -3'
miRNA:   3'- -UGGGGGuuu--CUGGGGGG--------------CCUG--UUUCU- -5'
3578 5' -57.2 NC_001650.1 + 26498 0.66 0.902457
Target:  5'- -aCCCCGGGGACacguuCCCC-GugGAGGAg -3'
miRNA:   3'- ugGGGGUUUCUGg----GGGGcCugUUUCU- -5'
3578 5' -57.2 NC_001650.1 + 4728 0.66 0.882906
Target:  5'- -gCUCCGGAGGCCCuccgugCCCGGcuCGGGGAa -3'
miRNA:   3'- ugGGGGUUUCUGGG------GGGCCu-GUUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.