miRNA display CGI


Results 1 - 20 of 262 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3578 5' -57.2 NC_001650.1 + 171572 1.08 0.003181
Target:  5'- gACCCCCAAAGACCCCCCGGACAAAGAc -3'
miRNA:   3'- -UGGGGGUUUCUGGGGGGCCUGUUUCU- -5'
3578 5' -57.2 NC_001650.1 + 4865 1.08 0.003181
Target:  5'- gACCCCCAAAGACCCCCCGGACAAAGAc -3'
miRNA:   3'- -UGGGGGUUUCUGGGGGGCCUGUUUCU- -5'
3578 5' -57.2 NC_001650.1 + 13925 0.83 0.148839
Target:  5'- cGCCCCCcuGGACCCCCgGGACcauGGAg -3'
miRNA:   3'- -UGGGGGuuUCUGGGGGgCCUGuu-UCU- -5'
3578 5' -57.2 NC_001650.1 + 172352 0.83 0.15262
Target:  5'- gGCCCCCuuAGACCCCCgGGGCuuAGu -3'
miRNA:   3'- -UGGGGGuuUCUGGGGGgCCUGuuUCu -5'
3578 5' -57.2 NC_001650.1 + 5645 0.83 0.15262
Target:  5'- gGCCCCCuuAGACCCCCgGGGCuuAGu -3'
miRNA:   3'- -UGGGGGuuUCUGGGGGgCCUGuuUCu -5'
3578 5' -57.2 NC_001650.1 + 23440 0.81 0.1816
Target:  5'- gAUCCCCAgcAGGACCUCCCGGGCGuccGAGGg -3'
miRNA:   3'- -UGGGGGU--UUCUGGGGGGCCUGU---UUCU- -5'
3578 5' -57.2 NC_001650.1 + 180632 0.81 0.190734
Target:  5'- cGCCCCCu-GGACCCCCgGGACcauGGAg -3'
miRNA:   3'- -UGGGGGuuUCUGGGGGgCCUGuu-UCU- -5'
3578 5' -57.2 NC_001650.1 + 52806 0.81 0.20519
Target:  5'- gGCCCCCAucccAGAgCUCCCGGGCGAAGc -3'
miRNA:   3'- -UGGGGGUu---UCUgGGGGGCCUGUUUCu -5'
3578 5' -57.2 NC_001650.1 + 143399 0.8 0.215347
Target:  5'- aGCCCCUGAuGACCCCCCGcaGCAGAGGg -3'
miRNA:   3'- -UGGGGGUUuCUGGGGGGCc-UGUUUCU- -5'
3578 5' -57.2 NC_001650.1 + 181206 0.8 0.236956
Target:  5'- aACCCCCuuGGACCCCC-GGACAccuuGGAu -3'
miRNA:   3'- -UGGGGGuuUCUGGGGGgCCUGUu---UCU- -5'
3578 5' -57.2 NC_001650.1 + 14499 0.8 0.236956
Target:  5'- aACCCCCuuGGACCCCC-GGACAccuuGGAu -3'
miRNA:   3'- -UGGGGGuuUCUGGGGGgCCUGUu---UCU- -5'
3578 5' -57.2 NC_001650.1 + 29001 0.79 0.254331
Target:  5'- gACCCCCAAgauccAGACCgUCCCGGcCGAGGAg -3'
miRNA:   3'- -UGGGGGUU-----UCUGG-GGGGCCuGUUUCU- -5'
3578 5' -57.2 NC_001650.1 + 59755 0.77 0.349339
Target:  5'- gGCCCCCGGGGGcgaggcgcCCCCCaCGGACAcgcuGGAc -3'
miRNA:   3'- -UGGGGGUUUCU--------GGGGG-GCCUGUu---UCU- -5'
3578 5' -57.2 NC_001650.1 + 134399 0.76 0.355472
Target:  5'- uACCCCCAGAGcccgaccACCgauguggaggaggCCCUGGACGAGGAg -3'
miRNA:   3'- -UGGGGGUUUC-------UGG-------------GGGGCCUGUUUCU- -5'
3578 5' -57.2 NC_001650.1 + 63185 0.76 0.380754
Target:  5'- cACCCCCAuGGACCCCuCCaGGuACAggAAGAa -3'
miRNA:   3'- -UGGGGGUuUCUGGGG-GG-CC-UGU--UUCU- -5'
3578 5' -57.2 NC_001650.1 + 122332 0.76 0.388897
Target:  5'- cGCCCCCGAGccGACCccgCCCUGGcCAAAGAu -3'
miRNA:   3'- -UGGGGGUUU--CUGG---GGGGCCuGUUUCU- -5'
3578 5' -57.2 NC_001650.1 + 156327 0.76 0.388897
Target:  5'- gACCCCCGgggcggugcuggAGGugCCCCUGGGCAAc-- -3'
miRNA:   3'- -UGGGGGU------------UUCugGGGGGCCUGUUucu -5'
3578 5' -57.2 NC_001650.1 + 132733 0.76 0.397154
Target:  5'- gUCCCCGGcucggugcacGACCCCCCGGACuccAGAGAg -3'
miRNA:   3'- uGGGGGUUu---------CUGGGGGGCCUG---UUUCU- -5'
3578 5' -57.2 NC_001650.1 + 110758 0.76 0.397154
Target:  5'- cGCCCCCGAAG--CCCCCGaGACAGAa- -3'
miRNA:   3'- -UGGGGGUUUCugGGGGGC-CUGUUUcu -5'
3578 5' -57.2 NC_001650.1 + 56064 0.75 0.405522
Target:  5'- uCCCCCAAAGACaCUCUCGGccgaccGCAGAGGg -3'
miRNA:   3'- uGGGGGUUUCUG-GGGGGCC------UGUUUCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.