miRNA display CGI


Results 1 - 20 of 262 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3578 5' -57.2 NC_001650.1 + 649 0.7 0.701888
Target:  5'- uCCCCCGAGGuCUgCCCGGAgAcGGGu -3'
miRNA:   3'- uGGGGGUUUCuGGgGGGCCUgUuUCU- -5'
3578 5' -57.2 NC_001650.1 + 790 0.66 0.907933
Target:  5'- cGCCCCCucAuuugcaugucucuGAUCCCCgGGACcaauGGGAg -3'
miRNA:   3'- -UGGGGGuuU-------------CUGGGGGgCCUGu---UUCU- -5'
3578 5' -57.2 NC_001650.1 + 888 0.72 0.562407
Target:  5'- cACCCCC---GGCCCCCCauuGGucACAAAGAg -3'
miRNA:   3'- -UGGGGGuuuCUGGGGGG---CC--UGUUUCU- -5'
3578 5' -57.2 NC_001650.1 + 1264 0.67 0.8688
Target:  5'- cGCCCCCc-GGGCCCCCauuGGCu-AGAu -3'
miRNA:   3'- -UGGGGGuuUCUGGGGGgc-CUGuuUCU- -5'
3578 5' -57.2 NC_001650.1 + 2320 0.67 0.838187
Target:  5'- uGCCCCCu--GACUCCCCGuuGGCcacauGGGGAu -3'
miRNA:   3'- -UGGGGGuuuCUGGGGGGC--CUG-----UUUCU- -5'
3578 5' -57.2 NC_001650.1 + 2740 0.67 0.861438
Target:  5'- cACCCCUcuAGGCCUCUauUGGcCAGAGGg -3'
miRNA:   3'- -UGGGGGuuUCUGGGGG--GCCuGUUUCU- -5'
3578 5' -57.2 NC_001650.1 + 2963 0.7 0.711689
Target:  5'- uCCCCCAu-GACCCCuCUGGcCAAuAGAg -3'
miRNA:   3'- uGGGGGUuuCUGGGG-GGCCuGUU-UCU- -5'
3578 5' -57.2 NC_001650.1 + 3888 0.68 0.790614
Target:  5'- uGCCCCUuaagggccaauggcaGAgcgGGACgCCCCGuGACGGGGAc -3'
miRNA:   3'- -UGGGGG---------------UU---UCUGgGGGGC-CUGUUUCU- -5'
3578 5' -57.2 NC_001650.1 + 4418 0.7 0.672181
Target:  5'- gACCCCCcauGACCCCCCauGACcgguAGGAc -3'
miRNA:   3'- -UGGGGGuuuCUGGGGGGc-CUGu---UUCU- -5'
3578 5' -57.2 NC_001650.1 + 4728 0.66 0.882906
Target:  5'- -gCUCCGGAGGCCCuccgugCCCGGcuCGGGGAa -3'
miRNA:   3'- ugGGGGUUUCUGGG------GGGCCu-GUUUCU- -5'
3578 5' -57.2 NC_001650.1 + 4865 1.08 0.003181
Target:  5'- gACCCCCAAAGACCCCCCGGACAAAGAc -3'
miRNA:   3'- -UGGGGGUUUCUGGGGGGCCUGUUUCU- -5'
3578 5' -57.2 NC_001650.1 + 5013 0.69 0.756742
Target:  5'- gGCUCCgGGGGGCCUCCgugugucugauaggCGGACGGGGGu -3'
miRNA:   3'- -UGGGGgUUUCUGGGGG--------------GCCUGUUUCU- -5'
3578 5' -57.2 NC_001650.1 + 5251 0.69 0.731088
Target:  5'- cACCCCCGGAGGgaCCCCCGuccgccuaucaGACAcacgGAGGc -3'
miRNA:   3'- -UGGGGGUUUCUg-GGGGGC-----------CUGU----UUCU- -5'
3578 5' -57.2 NC_001650.1 + 5645 0.83 0.15262
Target:  5'- gGCCCCCuuAGACCCCCgGGGCuuAGu -3'
miRNA:   3'- -UGGGGGuuUCUGGGGGgCCUGuuUCu -5'
3578 5' -57.2 NC_001650.1 + 5676 0.66 0.90853
Target:  5'- aGCCCCCAuuGGCCCUCUGuGGg----- -3'
miRNA:   3'- -UGGGGGUuuCUGGGGGGC-CUguuucu -5'
3578 5' -57.2 NC_001650.1 + 5835 0.74 0.494879
Target:  5'- gGCCCCCu-AGGCCCCCauuGGGCcauuGGGAu -3'
miRNA:   3'- -UGGGGGuuUCUGGGGGg--CCUGu---UUCU- -5'
3578 5' -57.2 NC_001650.1 + 6690 0.72 0.562407
Target:  5'- uACCCCCuc-GGCCCCCauuGGGCcAAGGg -3'
miRNA:   3'- -UGGGGGuuuCUGGGGGg--CCUGuUUCU- -5'
3578 5' -57.2 NC_001650.1 + 7277 0.71 0.662205
Target:  5'- aGCCCCCAuuGGGCCgCCgGGAUAGu-- -3'
miRNA:   3'- -UGGGGGUu-UCUGGgGGgCCUGUUucu -5'
3578 5' -57.2 NC_001650.1 + 7452 0.67 0.868073
Target:  5'- cACCCUCGgccaauaAAGACCCCgguugCUGGGCAGAc- -3'
miRNA:   3'- -UGGGGGU-------UUCUGGGG-----GGCCUGUUUcu -5'
3578 5' -57.2 NC_001650.1 + 8012 0.7 0.711689
Target:  5'- uGCCUggcaaCCAgaGAGACCCCaCUGGGCAuuGAg -3'
miRNA:   3'- -UGGG-----GGU--UUCUGGGG-GGCCUGUuuCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.