miRNA display CGI


Results 1 - 20 of 262 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3578 5' -57.2 NC_001650.1 + 136639 0.73 0.533081
Target:  5'- gGCgCCCuGAGGCUCCgCGGGCAGAGu -3'
miRNA:   3'- -UGgGGGuUUCUGGGGgGCCUGUUUCu -5'
3578 5' -57.2 NC_001650.1 + 134777 0.75 0.414001
Target:  5'- -gCCCCAGAGGCagaCCUCaCGGACGAGGAc -3'
miRNA:   3'- ugGGGGUUUCUG---GGGG-GCCUGUUUCU- -5'
3578 5' -57.2 NC_001650.1 + 107326 0.75 0.440077
Target:  5'- uCCCCCAcgGAGACCCCCgGGgGCAGc-- -3'
miRNA:   3'- uGGGGGU--UUCUGGGGGgCC-UGUUucu -5'
3578 5' -57.2 NC_001650.1 + 127191 0.74 0.457972
Target:  5'- cCCCCCAucGGCCCcggucuCCCGGGCGGcGGAg -3'
miRNA:   3'- uGGGGGUuuCUGGG------GGGCCUGUU-UCU- -5'
3578 5' -57.2 NC_001650.1 + 100439 0.74 0.467064
Target:  5'- cCUCCCAGGGGCCCCC-GGACGGc-- -3'
miRNA:   3'- uGGGGGUUUCUGGGGGgCCUGUUucu -5'
3578 5' -57.2 NC_001650.1 + 5835 0.74 0.494879
Target:  5'- gGCCCCCu-AGGCCCCCauuGGGCcauuGGGAu -3'
miRNA:   3'- -UGGGGGuuUCUGGGGGg--CCUGu---UUCU- -5'
3578 5' -57.2 NC_001650.1 + 172542 0.74 0.494879
Target:  5'- gGCCCCCu-AGGCCCCCauuGGGCcauuGGGAu -3'
miRNA:   3'- -UGGGGGuuUCUGGGGGg--CCUGu---UUCU- -5'
3578 5' -57.2 NC_001650.1 + 132931 0.73 0.504319
Target:  5'- aGCCgCCCGAGGGuCCCCCCGcGGCGc--- -3'
miRNA:   3'- -UGG-GGGUUUCU-GGGGGGC-CUGUuucu -5'
3578 5' -57.2 NC_001650.1 + 102665 0.73 0.513835
Target:  5'- gGCCCCuCAAccuGACCaCCCGGAcCGAAGAc -3'
miRNA:   3'- -UGGGG-GUUu--CUGGgGGGCCU-GUUUCU- -5'
3578 5' -57.2 NC_001650.1 + 56064 0.75 0.405522
Target:  5'- uCCCCCAAAGACaCUCUCGGccgaccGCAGAGGg -3'
miRNA:   3'- uGGGGGUUUCUG-GGGGGCC------UGUUUCU- -5'
3578 5' -57.2 NC_001650.1 + 132733 0.76 0.397154
Target:  5'- gUCCCCGGcucggugcacGACCCCCCGGACuccAGAGAg -3'
miRNA:   3'- uGGGGGUUu---------CUGGGGGGCCUG---UUUCU- -5'
3578 5' -57.2 NC_001650.1 + 110758 0.76 0.397154
Target:  5'- cGCCCCCGAAG--CCCCCGaGACAGAa- -3'
miRNA:   3'- -UGGGGGUUUCugGGGGGC-CUGUUUcu -5'
3578 5' -57.2 NC_001650.1 + 5645 0.83 0.15262
Target:  5'- gGCCCCCuuAGACCCCCgGGGCuuAGu -3'
miRNA:   3'- -UGGGGGuuUCUGGGGGgCCUGuuUCu -5'
3578 5' -57.2 NC_001650.1 + 172352 0.83 0.15262
Target:  5'- gGCCCCCuuAGACCCCCgGGGCuuAGu -3'
miRNA:   3'- -UGGGGGuuUCUGGGGGgCCUGuuUCu -5'
3578 5' -57.2 NC_001650.1 + 180632 0.81 0.190734
Target:  5'- cGCCCCCu-GGACCCCCgGGACcauGGAg -3'
miRNA:   3'- -UGGGGGuuUCUGGGGGgCCUGuu-UCU- -5'
3578 5' -57.2 NC_001650.1 + 14499 0.8 0.236956
Target:  5'- aACCCCCuuGGACCCCC-GGACAccuuGGAu -3'
miRNA:   3'- -UGGGGGuuUCUGGGGGgCCUGUu---UCU- -5'
3578 5' -57.2 NC_001650.1 + 181206 0.8 0.236956
Target:  5'- aACCCCCuuGGACCCCC-GGACAccuuGGAu -3'
miRNA:   3'- -UGGGGGuuUCUGGGGGgCCUGUu---UCU- -5'
3578 5' -57.2 NC_001650.1 + 29001 0.79 0.254331
Target:  5'- gACCCCCAAgauccAGACCgUCCCGGcCGAGGAg -3'
miRNA:   3'- -UGGGGGUU-----UCUGG-GGGGCCuGUUUCU- -5'
3578 5' -57.2 NC_001650.1 + 59755 0.77 0.349339
Target:  5'- gGCCCCCGGGGGcgaggcgcCCCCCaCGGACAcgcuGGAc -3'
miRNA:   3'- -UGGGGGUUUCU--------GGGGG-GCCUGUu---UCU- -5'
3578 5' -57.2 NC_001650.1 + 134399 0.76 0.355472
Target:  5'- uACCCCCAGAGcccgaccACCgauguggaggaggCCCUGGACGAGGAg -3'
miRNA:   3'- -UGGGGGUUUC-------UGG-------------GGGGCCUGUUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.