miRNA display CGI


Results 1 - 20 of 262 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3578 5' -57.2 NC_001650.1 + 171572 1.08 0.003181
Target:  5'- gACCCCCAAAGACCCCCCGGACAAAGAc -3'
miRNA:   3'- -UGGGGGUUUCUGGGGGGCCUGUUUCU- -5'
3578 5' -57.2 NC_001650.1 + 121277 0.71 0.622147
Target:  5'- cGCCCCCcgcgccgcGGCgUCCCCGGGCAGGGc -3'
miRNA:   3'- -UGGGGGuuu-----CUG-GGGGGCCUGUUUCu -5'
3578 5' -57.2 NC_001650.1 + 158855 0.71 0.632169
Target:  5'- gACCCCCGuAG-CCgCCUGGAgGGAGGg -3'
miRNA:   3'- -UGGGGGUuUCuGGgGGGCCUgUUUCU- -5'
3578 5' -57.2 NC_001650.1 + 26774 0.66 0.910896
Target:  5'- aGCCCCgagagCAGGGgcagcgagaacaccuGCCCCCCGcGugGAGGu -3'
miRNA:   3'- -UGGGG-----GUUUC---------------UGGGGGGC-CugUUUCu -5'
3578 5' -57.2 NC_001650.1 + 143399 0.8 0.215347
Target:  5'- aGCCCCUGAuGACCCCCCGcaGCAGAGGg -3'
miRNA:   3'- -UGGGGGUUuCUGGGGGGCc-UGUUUCU- -5'
3578 5' -57.2 NC_001650.1 + 63185 0.76 0.380754
Target:  5'- cACCCCCAuGGACCCCuCCaGGuACAggAAGAa -3'
miRNA:   3'- -UGGGGGUuUCUGGGG-GG-CC-UGU--UUCU- -5'
3578 5' -57.2 NC_001650.1 + 122332 0.76 0.388897
Target:  5'- cGCCCCCGAGccGACCccgCCCUGGcCAAAGAu -3'
miRNA:   3'- -UGGGGGUUU--CUGG---GGGGCCuGUUUCU- -5'
3578 5' -57.2 NC_001650.1 + 53146 0.75 0.431281
Target:  5'- aACCCCC---GGCCCCuCCGGGCGccGGGAu -3'
miRNA:   3'- -UGGGGGuuuCUGGGG-GGCCUGU--UUCU- -5'
3578 5' -57.2 NC_001650.1 + 131547 0.73 0.508116
Target:  5'- gGCCCCCGGccGGGCCCaCCCgcgggugcgucucggGGAgGAAGAg -3'
miRNA:   3'- -UGGGGGUU--UCUGGG-GGG---------------CCUgUUUCU- -5'
3578 5' -57.2 NC_001650.1 + 131741 0.72 0.592152
Target:  5'- aGCCCCCGGGcggccacguuGACCgCgUGGGCGAAGAg -3'
miRNA:   3'- -UGGGGGUUU----------CUGGgGgGCCUGUUUCU- -5'
3578 5' -57.2 NC_001650.1 + 28863 0.73 0.542801
Target:  5'- uCCCCCuuGGGggUCCCCCuGACAAAGGc -3'
miRNA:   3'- uGGGGGuuUCU--GGGGGGcCUGUUUCU- -5'
3578 5' -57.2 NC_001650.1 + 125226 0.73 0.504319
Target:  5'- cGCCCCC-GGGACCCCCuCuGGCGaucGAGAg -3'
miRNA:   3'- -UGGGGGuUUCUGGGGG-GcCUGU---UUCU- -5'
3578 5' -57.2 NC_001650.1 + 4865 1.08 0.003181
Target:  5'- gACCCCCAAAGACCCCCCGGACAAAGAc -3'
miRNA:   3'- -UGGGGGUUUCUGGGGGGCCUGUUUCU- -5'
3578 5' -57.2 NC_001650.1 + 75597 0.72 0.592152
Target:  5'- cGCCCCCAGc-GCCaCCgCGGAUGAGGAc -3'
miRNA:   3'- -UGGGGGUUucUGG-GGgGCCUGUUUCU- -5'
3578 5' -57.2 NC_001650.1 + 23440 0.81 0.1816
Target:  5'- gAUCCCCAgcAGGACCUCCCGGGCGuccGAGGg -3'
miRNA:   3'- -UGGGGGU--UUCUGGGGGGCCUGU---UUCU- -5'
3578 5' -57.2 NC_001650.1 + 159930 0.73 0.504319
Target:  5'- gGCCCCCAacaaacacucaaGAGACCCCCCcaACAAAc- -3'
miRNA:   3'- -UGGGGGU------------UUCUGGGGGGccUGUUUcu -5'
3578 5' -57.2 NC_001650.1 + 49784 0.72 0.592152
Target:  5'- cGCCCCCAucacaGAGACCaCCCCGuGCAc--- -3'
miRNA:   3'- -UGGGGGU-----UUCUGG-GGGGCcUGUuucu -5'
3578 5' -57.2 NC_001650.1 + 47702 0.71 0.629162
Target:  5'- aACCCCCAccgugucaGAGACCCCggCCacugagauuuagggGGGCGAGGGu -3'
miRNA:   3'- -UGGGGGU--------UUCUGGGG--GG--------------CCUGUUUCU- -5'
3578 5' -57.2 NC_001650.1 + 52806 0.81 0.20519
Target:  5'- gGCCCCCAucccAGAgCUCCCGGGCGAAGc -3'
miRNA:   3'- -UGGGGGUu---UCUgGGGGGCCUGUUUCu -5'
3578 5' -57.2 NC_001650.1 + 156327 0.76 0.388897
Target:  5'- gACCCCCGgggcggugcuggAGGugCCCCUGGGCAAc-- -3'
miRNA:   3'- -UGGGGGU------------UUCugGGGGGCCUGUUucu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.