miRNA display CGI


Results 1 - 20 of 262 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3578 5' -57.2 NC_001650.1 + 181816 0.66 0.907933
Target:  5'- cACCCCCGuuGGGCCguggCCUGGugagaagACAAAGAu -3'
miRNA:   3'- -UGGGGGUu-UCUGGg---GGGCC-------UGUUUCU- -5'
3578 5' -57.2 NC_001650.1 + 181206 0.8 0.236956
Target:  5'- aACCCCCuuGGACCCCC-GGACAccuuGGAu -3'
miRNA:   3'- -UGGGGGuuUCUGGGGGgCCUGUu---UCU- -5'
3578 5' -57.2 NC_001650.1 + 181144 0.66 0.90853
Target:  5'- cCCCCCuuGGACCCCUgccaccccccuUGGACc---- -3'
miRNA:   3'- uGGGGGuuUCUGGGGG-----------GCCUGuuucu -5'
3578 5' -57.2 NC_001650.1 + 181035 0.67 0.838187
Target:  5'- gACCCCCAcauGGACCCuugCCCacuuGGACAu--- -3'
miRNA:   3'- -UGGGGGUu--UCUGGG---GGG----CCUGUuucu -5'
3578 5' -57.2 NC_001650.1 + 180865 0.68 0.81332
Target:  5'- gACCCC---GGACUCCCUGGACccacauGGAc -3'
miRNA:   3'- -UGGGGguuUCUGGGGGGCCUGuu----UCU- -5'
3578 5' -57.2 NC_001650.1 + 180632 0.81 0.190734
Target:  5'- cGCCCCCu-GGACCCCCgGGACcauGGAg -3'
miRNA:   3'- -UGGGGGuuUCUGGGGGgCCUGuu-UCU- -5'
3578 5' -57.2 NC_001650.1 + 180597 0.7 0.682126
Target:  5'- aACUCCCAuccuuacAGGCuuCCCCCGGAgAGAGGn -3'
miRNA:   3'- -UGGGGGUu------UCUG--GGGGGCCUgUUUCU- -5'
3578 5' -57.2 NC_001650.1 + 179003 0.71 0.622147
Target:  5'- cCUCCCAGGGACCCCCauGuACaAGAGAg -3'
miRNA:   3'- uGGGGGUUUCUGGGGGgcC-UG-UUUCU- -5'
3578 5' -57.2 NC_001650.1 + 177084 0.72 0.5822
Target:  5'- cACCCgCAuuuGAGACCCCCgGGAgGAuGGAc -3'
miRNA:   3'- -UGGGgGU---UUCUGGGGGgCCUgUU-UCU- -5'
3578 5' -57.2 NC_001650.1 + 175837 0.69 0.758614
Target:  5'- gGCCCCauGGGACUCCCCcguggcuGGGCaAGAGAg -3'
miRNA:   3'- -UGGGGguUUCUGGGGGG-------CCUG-UUUCU- -5'
3578 5' -57.2 NC_001650.1 + 175038 0.67 0.8688
Target:  5'- cACCCCCAuAGcccccACCaCCCCGGGgGu-GAa -3'
miRNA:   3'- -UGGGGGUuUC-----UGG-GGGGCCUgUuuCU- -5'
3578 5' -57.2 NC_001650.1 + 174719 0.7 0.711689
Target:  5'- uGCCUggcaaCCAgaGAGACCCCaCUGGGCAuuGAg -3'
miRNA:   3'- -UGGG-----GGU--UUCUGGGG-GGCCUGUuuCU- -5'
3578 5' -57.2 NC_001650.1 + 174159 0.67 0.868073
Target:  5'- cACCCUCGgccaauaAAGACCCCgguugCUGGGCAGAc- -3'
miRNA:   3'- -UGGGGGU-------UUCUGGGG-----GGCCUGUUUcu -5'
3578 5' -57.2 NC_001650.1 + 173984 0.71 0.662205
Target:  5'- aGCCCCCAuuGGGCCgCCgGGAUAGu-- -3'
miRNA:   3'- -UGGGGGUu-UCUGGgGGgCCUGUUucu -5'
3578 5' -57.2 NC_001650.1 + 173397 0.72 0.562407
Target:  5'- uACCCCCuc-GGCCCCCauuGGGCcAAGGg -3'
miRNA:   3'- -UGGGGGuuuCUGGGGGg--CCUGuUUCU- -5'
3578 5' -57.2 NC_001650.1 + 172542 0.74 0.494879
Target:  5'- gGCCCCCu-AGGCCCCCauuGGGCcauuGGGAu -3'
miRNA:   3'- -UGGGGGuuUCUGGGGGg--CCUGu---UUCU- -5'
3578 5' -57.2 NC_001650.1 + 172383 0.66 0.90853
Target:  5'- aGCCCCCAuuGGCCCUCUGuGGg----- -3'
miRNA:   3'- -UGGGGGUuuCUGGGGGGC-CUguuucu -5'
3578 5' -57.2 NC_001650.1 + 172352 0.83 0.15262
Target:  5'- gGCCCCCuuAGACCCCCgGGGCuuAGu -3'
miRNA:   3'- -UGGGGGuuUCUGGGGGgCCUGuuUCu -5'
3578 5' -57.2 NC_001650.1 + 171958 0.69 0.731088
Target:  5'- cACCCCCGGAGGgaCCCCCGuccgccuaucaGACAcacgGAGGc -3'
miRNA:   3'- -UGGGGGUUUCUg-GGGGGC-----------CUGU----UUCU- -5'
3578 5' -57.2 NC_001650.1 + 171720 0.69 0.756742
Target:  5'- gGCUCCgGGGGGCCUCCgugugucugauaggCGGACGGGGGu -3'
miRNA:   3'- -UGGGGgUUUCUGGGGG--------------GCCUGUUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.