miRNA display CGI


Results 41 - 60 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3580 3' -57.2 NC_001650.1 + 73164 0.67 0.824148
Target:  5'- cAGGGCCuccaccucggucuuUGuGGGGCUGCCCu----- -3'
miRNA:   3'- -UCCCGGuu------------AC-CCCCGAUGGGugauuc -5'
3580 3' -57.2 NC_001650.1 + 29049 0.67 0.823305
Target:  5'- cGGGgCGcgGGGGGUgGCCgACgUGGGg -3'
miRNA:   3'- uCCCgGUuaCCCCCGaUGGgUG-AUUC- -5'
3580 3' -57.2 NC_001650.1 + 62985 0.67 0.823305
Target:  5'- aGGGGUCcAUGGGGGUgggcaagacgACCCucAUUAGGc -3'
miRNA:   3'- -UCCCGGuUACCCCCGa---------UGGG--UGAUUC- -5'
3580 3' -57.2 NC_001650.1 + 127563 0.67 0.814781
Target:  5'- aGGGGCgAG-GGGGGCgaccGCCCAg---- -3'
miRNA:   3'- -UCCCGgUUaCCCCCGa---UGGGUgauuc -5'
3580 3' -57.2 NC_001650.1 + 23788 0.67 0.814781
Target:  5'- -uGGCU-AUGGGGGCcaggGCCagGCUGAGg -3'
miRNA:   3'- ucCCGGuUACCCCCGa---UGGg-UGAUUC- -5'
3580 3' -57.2 NC_001650.1 + 168357 0.67 0.814781
Target:  5'- uGGGaGCCg--GGGGGCcgGCCUugUGGu -3'
miRNA:   3'- -UCC-CGGuuaCCCCCGa-UGGGugAUUc -5'
3580 3' -57.2 NC_001650.1 + 134535 0.67 0.814781
Target:  5'- gAGGGCCccgGGGGGC-GCCgGggGGGa -3'
miRNA:   3'- -UCCCGGuuaCCCCCGaUGGgUgaUUC- -5'
3580 3' -57.2 NC_001650.1 + 109366 0.67 0.814781
Target:  5'- cGGGCC---GGGGGCagGCCgACUugAAGa -3'
miRNA:   3'- uCCCGGuuaCCCCCGa-UGGgUGA--UUC- -5'
3580 3' -57.2 NC_001650.1 + 1650 0.67 0.814781
Target:  5'- uGGGaGCCg--GGGGGCcgGCCUugUGGu -3'
miRNA:   3'- -UCC-CGGuuaCCCCCGa-UGGGugAUUc -5'
3580 3' -57.2 NC_001650.1 + 72724 0.68 0.806094
Target:  5'- gAGGGCCAAgcugGuGGGGCagACgCUGCUGGu -3'
miRNA:   3'- -UCCCGGUUa---C-CCCCGa-UG-GGUGAUUc -5'
3580 3' -57.2 NC_001650.1 + 15060 0.68 0.805217
Target:  5'- cGGGCCGcUGGGGGggaagggacggccCcGCCCGCUu-- -3'
miRNA:   3'- uCCCGGUuACCCCC-------------GaUGGGUGAuuc -5'
3580 3' -57.2 NC_001650.1 + 181767 0.68 0.805217
Target:  5'- cGGGCCGcUGGGGGggaagggacggccCcGCCCGCUu-- -3'
miRNA:   3'- uCCCGGUuACCCCC-------------GaUGGGUGAuuc -5'
3580 3' -57.2 NC_001650.1 + 123960 0.68 0.803458
Target:  5'- gGGGGUgGAguacacGGGGGCguuccuguacuuugUGCCCGCcGAGg -3'
miRNA:   3'- -UCCCGgUUa-----CCCCCG--------------AUGGGUGaUUC- -5'
3580 3' -57.2 NC_001650.1 + 58532 0.68 0.797253
Target:  5'- cAGGGCCAcgugcuggaagAUGGGGGUgucGCCCc----- -3'
miRNA:   3'- -UCCCGGU-----------UACCCCCGa--UGGGugauuc -5'
3580 3' -57.2 NC_001650.1 + 171383 0.68 0.797253
Target:  5'- gGGGGUCcg-GGGGGUcuuaaagACCCuCUAGGa -3'
miRNA:   3'- -UCCCGGuuaCCCCCGa------UGGGuGAUUC- -5'
3580 3' -57.2 NC_001650.1 + 4676 0.68 0.797253
Target:  5'- gGGGGUCcg-GGGGGUcuuaaagACCCuCUAGGa -3'
miRNA:   3'- -UCCCGGuuaCCCCCGa------UGGGuGAUUC- -5'
3580 3' -57.2 NC_001650.1 + 36490 0.68 0.788265
Target:  5'- cAGGGaCCg--GGGGGCaggGCCagGCUGGGg -3'
miRNA:   3'- -UCCC-GGuuaCCCCCGa--UGGg-UGAUUC- -5'
3580 3' -57.2 NC_001650.1 + 134134 0.68 0.769885
Target:  5'- cGGGGUCug-GGGGGCgccCCCAgCUGu- -3'
miRNA:   3'- -UCCCGGuuaCCCCCGau-GGGU-GAUuc -5'
3580 3' -57.2 NC_001650.1 + 48244 0.68 0.768953
Target:  5'- gAGGGUCucgagGGGGGCUGCUUccaggcgGCUAGc -3'
miRNA:   3'- -UCCCGGuua--CCCCCGAUGGG-------UGAUUc -5'
3580 3' -57.2 NC_001650.1 + 155987 0.68 0.76051
Target:  5'- gGGcGGCgGGUGGGGGCgGCCgUGCUGu- -3'
miRNA:   3'- -UC-CCGgUUACCCCCGaUGG-GUGAUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.