miRNA display CGI


Results 21 - 40 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3580 3' -57.2 NC_001650.1 + 145495 0.66 0.863221
Target:  5'- aAGGGCC---GGGGGCU-CCUggucaGCUGGa -3'
miRNA:   3'- -UCCCGGuuaCCCCCGAuGGG-----UGAUUc -5'
3580 3' -57.2 NC_001650.1 + 109410 0.66 0.863221
Target:  5'- cGGGGCCGGUGcGuGcGGCUccCCCACa--- -3'
miRNA:   3'- -UCCCGGUUAC-C-C-CCGAu-GGGUGauuc -5'
3580 3' -57.2 NC_001650.1 + 7365 0.66 0.863221
Target:  5'- uGGcCCAAUGGGGaCUGUCCACUAu- -3'
miRNA:   3'- uCCcGGUUACCCCcGAUGGGUGAUuc -5'
3580 3' -57.2 NC_001650.1 + 174613 0.66 0.855621
Target:  5'- ---cCCAAUGGGGGCUcggguuGCCUggcagACUAAGg -3'
miRNA:   3'- ucccGGUUACCCCCGA------UGGG-----UGAUUC- -5'
3580 3' -57.2 NC_001650.1 + 107527 0.66 0.855621
Target:  5'- gGGGGUCuccGUGGGGG--ACCUGCUGcAGa -3'
miRNA:   3'- -UCCCGGu--UACCCCCgaUGGGUGAU-UC- -5'
3580 3' -57.2 NC_001650.1 + 7906 0.66 0.855621
Target:  5'- ---cCCAAUGGGGGCUcggguuGCCUggcagACUAAGg -3'
miRNA:   3'- ucccGGUUACCCCCGA------UGGG-----UGAUUC- -5'
3580 3' -57.2 NC_001650.1 + 127491 0.66 0.855621
Target:  5'- uGGGGCCGGggagGGGGGC-GCCgGg---- -3'
miRNA:   3'- -UCCCGGUUa---CCCCCGaUGGgUgauuc -5'
3580 3' -57.2 NC_001650.1 + 73173 0.66 0.855621
Target:  5'- uGGGCC-AUGGGGGaCUugugCCACUc-- -3'
miRNA:   3'- uCCCGGuUACCCCC-GAug--GGUGAuuc -5'
3580 3' -57.2 NC_001650.1 + 112195 0.67 0.847823
Target:  5'- --aGUCA--GGGGGCUGCCCACc--- -3'
miRNA:   3'- uccCGGUuaCCCCCGAUGGGUGauuc -5'
3580 3' -57.2 NC_001650.1 + 100390 0.67 0.847823
Target:  5'- uGGGUCAuGUGGuGGCUGCaCCACa--- -3'
miRNA:   3'- uCCCGGU-UACCcCCGAUG-GGUGauuc -5'
3580 3' -57.2 NC_001650.1 + 76881 0.67 0.839833
Target:  5'- -aGGCCAcgGGGGuGCagugGCCCAUg--- -3'
miRNA:   3'- ucCCGGUuaCCCC-CGa---UGGGUGauuc -5'
3580 3' -57.2 NC_001650.1 + 171089 0.67 0.839833
Target:  5'- uAGGGCCcguccAAUGGGaGGCcggggACCC-CUGGa -3'
miRNA:   3'- -UCCCGG-----UUACCC-CCGa----UGGGuGAUUc -5'
3580 3' -57.2 NC_001650.1 + 87305 0.67 0.839833
Target:  5'- gAGGGUgg--GGGuucccaccauGGCUAUCCACUGGGa -3'
miRNA:   3'- -UCCCGguuaCCC----------CCGAUGGGUGAUUC- -5'
3580 3' -57.2 NC_001650.1 + 4382 0.67 0.839833
Target:  5'- uAGGGCCcguccAAUGGGaGGCcggggACCC-CUGGa -3'
miRNA:   3'- -UCCCGG-----UUACCC-CCGa----UGGGuGAUUc -5'
3580 3' -57.2 NC_001650.1 + 130033 0.67 0.839833
Target:  5'- aAGGGCCAGaucgacgagGGGGaGCggGCCUACg--- -3'
miRNA:   3'- -UCCCGGUUa--------CCCC-CGa-UGGGUGauuc -5'
3580 3' -57.2 NC_001650.1 + 6888 0.67 0.831658
Target:  5'- gGGGGCCGA-GGGGGUacUACCaugGCcaaugAAGg -3'
miRNA:   3'- -UCCCGGUUaCCCCCG--AUGGg--UGa----UUC- -5'
3580 3' -57.2 NC_001650.1 + 56229 0.67 0.831658
Target:  5'- uGGGGCCAGgggaguUGGGGGUggUugUUAgUGGGg -3'
miRNA:   3'- -UCCCGGUU------ACCCCCG--AugGGUgAUUC- -5'
3580 3' -57.2 NC_001650.1 + 100124 0.67 0.831658
Target:  5'- cGGGCCGGggaGGGGGggACCCu----- -3'
miRNA:   3'- uCCCGGUUa--CCCCCgaUGGGugauuc -5'
3580 3' -57.2 NC_001650.1 + 130668 0.67 0.831658
Target:  5'- gAGGGUCAccGGGGGCaaGgCCGCcgugGAGg -3'
miRNA:   3'- -UCCCGGUuaCCCCCGa-UgGGUGa---UUC- -5'
3580 3' -57.2 NC_001650.1 + 173595 0.67 0.831658
Target:  5'- gGGGGCCGA-GGGGGUacUACCaugGCcaaugAAGg -3'
miRNA:   3'- -UCCCGGUUaCCCCCG--AUGGg--UGa----UUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.