miRNA display CGI


Results 21 - 40 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3580 3' -57.2 NC_001650.1 + 6888 0.67 0.831658
Target:  5'- gGGGGCCGA-GGGGGUacUACCaugGCcaaugAAGg -3'
miRNA:   3'- -UCCCGGUUaCCCCCG--AUGGg--UGa----UUC- -5'
3580 3' -57.2 NC_001650.1 + 7253 0.79 0.251028
Target:  5'- uGGcCCAAUGGGGGCUGUCCACUAu- -3'
miRNA:   3'- uCCcGGUUACCCCCGAUGGGUGAUuc -5'
3580 3' -57.2 NC_001650.1 + 7365 0.66 0.863221
Target:  5'- uGGcCCAAUGGGGaCUGUCCACUAu- -3'
miRNA:   3'- uCCcGGUUACCCCcGAUGGGUGAUuc -5'
3580 3' -57.2 NC_001650.1 + 7479 0.89 0.053822
Target:  5'- cGGcGGcCCAAUGGGGGCUACCCACUGc- -3'
miRNA:   3'- -UC-CC-GGUUACCCCCGAUGGGUGAUuc -5'
3580 3' -57.2 NC_001650.1 + 7599 0.76 0.346318
Target:  5'- uGGcCCAAUGGGGGCUGuCCCACc--- -3'
miRNA:   3'- uCCcGGUUACCCCCGAU-GGGUGauuc -5'
3580 3' -57.2 NC_001650.1 + 7711 0.88 0.059902
Target:  5'- uGGcCCAAUGGGGGCUACCCACUAu- -3'
miRNA:   3'- uCCcGGUUACCCCCGAUGGGUGAUuc -5'
3580 3' -57.2 NC_001650.1 + 7906 0.66 0.855621
Target:  5'- ---cCCAAUGGGGGCUcggguuGCCUggcagACUAAGg -3'
miRNA:   3'- ucccGGUUACCCCCGA------UGGG-----UGAUUC- -5'
3580 3' -57.2 NC_001650.1 + 7940 0.71 0.611455
Target:  5'- cGGGcCCAAUGGGGaccuUCCACUAAGu -3'
miRNA:   3'- uCCC-GGUUACCCCcgauGGGUGAUUC- -5'
3580 3' -57.2 NC_001650.1 + 8144 0.76 0.354037
Target:  5'- gGGGGcCCAAUGGGGGaUGUCCACUAGc -3'
miRNA:   3'- -UCCC-GGUUACCCCCgAUGGGUGAUUc -5'
3580 3' -57.2 NC_001650.1 + 8260 0.78 0.267565
Target:  5'- gGGGGCCAAUGGGGGgccuguggguauuaCUcaauGCCCAgUGGGg -3'
miRNA:   3'- -UCCCGGUUACCCCC--------------GA----UGGGUgAUUC- -5'
3580 3' -57.2 NC_001650.1 + 15060 0.68 0.805217
Target:  5'- cGGGCCGcUGGGGGggaagggacggccCcGCCCGCUu-- -3'
miRNA:   3'- uCCCGGUuACCCCC-------------GaUGGGUGAuuc -5'
3580 3' -57.2 NC_001650.1 + 17153 0.82 0.149604
Target:  5'- uGGGUU-AUGGGGGCUuCCCACUGAGa -3'
miRNA:   3'- uCCCGGuUACCCCCGAuGGGUGAUUC- -5'
3580 3' -57.2 NC_001650.1 + 17449 0.66 0.877801
Target:  5'- gGGGGUU--UGuGGGGCUGCCUgggaUGAGg -3'
miRNA:   3'- -UCCCGGuuAC-CCCCGAUGGGug--AUUC- -5'
3580 3' -57.2 NC_001650.1 + 17699 0.72 0.58521
Target:  5'- uGGGCCugagaaaauggaGGGGGCgugGCCCACUu-- -3'
miRNA:   3'- uCCCGGuua---------CCCCCGa--UGGGUGAuuc -5'
3580 3' -57.2 NC_001650.1 + 18138 0.66 0.891523
Target:  5'- gGGGGUgGugugGGGGGCaUACUCACc--- -3'
miRNA:   3'- -UCCCGgUua--CCCCCG-AUGGGUGauuc -5'
3580 3' -57.2 NC_001650.1 + 21371 0.69 0.702231
Target:  5'- gAGGGCCAGagGGGGGC-GCgCgACUGu- -3'
miRNA:   3'- -UCCCGGUUa-CCCCCGaUG-GgUGAUuc -5'
3580 3' -57.2 NC_001650.1 + 21515 0.71 0.631719
Target:  5'- cGGGaCCGG-GGGGGCUA-CUGCUGGGa -3'
miRNA:   3'- uCCC-GGUUaCCCCCGAUgGGUGAUUC- -5'
3580 3' -57.2 NC_001650.1 + 23752 0.7 0.672188
Target:  5'- -cGGCgCGcgGGGGGCggagACCCGCccGAGg -3'
miRNA:   3'- ucCCG-GUuaCCCCCGa---UGGGUGa-UUC- -5'
3580 3' -57.2 NC_001650.1 + 23788 0.67 0.814781
Target:  5'- -uGGCU-AUGGGGGCcaggGCCagGCUGAGg -3'
miRNA:   3'- ucCCGGuUACCCCCGa---UGGg-UGAUUC- -5'
3580 3' -57.2 NC_001650.1 + 27803 0.71 0.631719
Target:  5'- gAGGGCCGA-GGcGGGCacGCCCGggAAGg -3'
miRNA:   3'- -UCCCGGUUaCC-CCCGa-UGGGUgaUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.