miRNA display CGI


Results 21 - 40 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3580 3' -57.2 NC_001650.1 + 143199 0.66 0.870616
Target:  5'- gGGGGUCAucaGGGGCUGCUCGg---- -3'
miRNA:   3'- -UCCCGGUuacCCCCGAUGGGUgauuc -5'
3580 3' -57.2 NC_001650.1 + 167000 0.66 0.891523
Target:  5'- gAGGGCCccgaggGGGGGUUuCCCGg---- -3'
miRNA:   3'- -UCCCGGuua---CCCCCGAuGGGUgauuc -5'
3580 3' -57.2 NC_001650.1 + 106285 0.66 0.869886
Target:  5'- cGGGCUuaaagaacuugguGGUGGuGGGC-ACCCGCg--- -3'
miRNA:   3'- uCCCGG-------------UUACC-CCCGaUGGGUGauuc -5'
3580 3' -57.2 NC_001650.1 + 127491 0.66 0.855621
Target:  5'- uGGGGCCGGggagGGGGGC-GCCgGg---- -3'
miRNA:   3'- -UCCCGGUUa---CCCCCGaUGGgUgauuc -5'
3580 3' -57.2 NC_001650.1 + 17449 0.66 0.877801
Target:  5'- gGGGGUU--UGuGGGGCUGCCUgggaUGAGg -3'
miRNA:   3'- -UCCCGGuuAC-CCCCGAUGGGug--AUUC- -5'
3580 3' -57.2 NC_001650.1 + 184156 0.66 0.877801
Target:  5'- gGGGGUU--UGuGGGGCUGCCUgggaUGAGg -3'
miRNA:   3'- -UCCCGGuuAC-CCCCGAUGGGug--AUUC- -5'
3580 3' -57.2 NC_001650.1 + 145745 0.66 0.877801
Target:  5'- cAGGGCC-AUGGcGGGCaggUCCGCcGGGu -3'
miRNA:   3'- -UCCCGGuUACC-CCCGau-GGGUGaUUC- -5'
3580 3' -57.2 NC_001650.1 + 109265 0.66 0.877801
Target:  5'- cGGGGUggCGAUagugGGGGGCgcCCCGCUc-- -3'
miRNA:   3'- -UCCCG--GUUA----CCCCCGauGGGUGAuuc -5'
3580 3' -57.2 NC_001650.1 + 100390 0.67 0.847823
Target:  5'- uGGGUCAuGUGGuGGCUGCaCCACa--- -3'
miRNA:   3'- uCCCGGU-UACCcCCGAUG-GGUGauuc -5'
3580 3' -57.2 NC_001650.1 + 130668 0.67 0.831658
Target:  5'- gAGGGUCAccGGGGGCaaGgCCGCcgugGAGg -3'
miRNA:   3'- -UCCCGGUuaCCCCCGa-UgGGUGa---UUC- -5'
3580 3' -57.2 NC_001650.1 + 112195 0.67 0.847823
Target:  5'- --aGUCA--GGGGGCUGCCCACc--- -3'
miRNA:   3'- uccCGGUuaCCCCCGAUGGGUGauuc -5'
3580 3' -57.2 NC_001650.1 + 87305 0.67 0.839833
Target:  5'- gAGGGUgg--GGGuucccaccauGGCUAUCCACUGGGa -3'
miRNA:   3'- -UCCCGguuaCCC----------CCGAUGGGUGAUUC- -5'
3580 3' -57.2 NC_001650.1 + 127563 0.67 0.814781
Target:  5'- aGGGGCgAG-GGGGGCgaccGCCCAg---- -3'
miRNA:   3'- -UCCCGgUUaCCCCCGa---UGGGUgauuc -5'
3580 3' -57.2 NC_001650.1 + 173595 0.67 0.831658
Target:  5'- gGGGGCCGA-GGGGGUacUACCaugGCcaaugAAGg -3'
miRNA:   3'- -UCCCGGUUaCCCCCG--AUGGg--UGa----UUC- -5'
3580 3' -57.2 NC_001650.1 + 56229 0.67 0.831658
Target:  5'- uGGGGCCAGgggaguUGGGGGUggUugUUAgUGGGg -3'
miRNA:   3'- -UCCCGGUU------ACCCCCG--AugGGUgAUUC- -5'
3580 3' -57.2 NC_001650.1 + 134535 0.67 0.814781
Target:  5'- gAGGGCCccgGGGGGC-GCCgGggGGGa -3'
miRNA:   3'- -UCCCGGuuaCCCCCGaUGGgUgaUUC- -5'
3580 3' -57.2 NC_001650.1 + 1650 0.67 0.814781
Target:  5'- uGGGaGCCg--GGGGGCcgGCCUugUGGu -3'
miRNA:   3'- -UCC-CGGuuaCCCCCGa-UGGGugAUUc -5'
3580 3' -57.2 NC_001650.1 + 23788 0.67 0.814781
Target:  5'- -uGGCU-AUGGGGGCcaggGCCagGCUGAGg -3'
miRNA:   3'- ucCCGGuUACCCCCGa---UGGg-UGAUUC- -5'
3580 3' -57.2 NC_001650.1 + 109366 0.67 0.814781
Target:  5'- cGGGCC---GGGGGCagGCCgACUugAAGa -3'
miRNA:   3'- uCCCGGuuaCCCCCGa-UGGgUGA--UUC- -5'
3580 3' -57.2 NC_001650.1 + 168357 0.67 0.814781
Target:  5'- uGGGaGCCg--GGGGGCcgGCCUugUGGu -3'
miRNA:   3'- -UCC-CGGuuaCCCCCGa-UGGGugAUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.