miRNA display CGI


Results 21 - 40 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3580 3' -57.2 NC_001650.1 + 8144 0.76 0.354037
Target:  5'- gGGGGcCCAAUGGGGGaUGUCCACUAGc -3'
miRNA:   3'- -UCCC-GGUUACCCCCgAUGGGUGAUUc -5'
3580 3' -57.2 NC_001650.1 + 174851 0.76 0.354037
Target:  5'- gGGGGcCCAAUGGGGGaUGUCCACUAGc -3'
miRNA:   3'- -UCCC-GGUUACCCCCgAUGGGUGAUUc -5'
3580 3' -57.2 NC_001650.1 + 71897 0.75 0.38611
Target:  5'- gGGGGCCAGggacUGGGGGauguUGCCCACc--- -3'
miRNA:   3'- -UCCCGGUU----ACCCCCg---AUGGGUGauuc -5'
3580 3' -57.2 NC_001650.1 + 172551 0.75 0.402849
Target:  5'- gGGGGUCuaaGGGGGCcGCCCACUc-- -3'
miRNA:   3'- -UCCCGGuuaCCCCCGaUGGGUGAuuc -5'
3580 3' -57.2 NC_001650.1 + 173491 0.75 0.402849
Target:  5'- uGGcCCAAUGGGGGCUuagggguacuGCCCACUc-- -3'
miRNA:   3'- uCCcGGUUACCCCCGA----------UGGGUGAuuc -5'
3580 3' -57.2 NC_001650.1 + 5844 0.75 0.402849
Target:  5'- gGGGGUCuaaGGGGGCcGCCCACUc-- -3'
miRNA:   3'- -UCCCGGuuaCCCCCGaUGGGUGAuuc -5'
3580 3' -57.2 NC_001650.1 + 58760 0.74 0.428803
Target:  5'- cGGGGCCAagGGGGGCgacACCCcCa--- -3'
miRNA:   3'- -UCCCGGUuaCCCCCGa--UGGGuGauuc -5'
3580 3' -57.2 NC_001650.1 + 6157 0.74 0.455716
Target:  5'- uGGGaGCUAA-GGGGGaCUGCCCACUc-- -3'
miRNA:   3'- -UCC-CGGUUaCCCCC-GAUGGGUGAuuc -5'
3580 3' -57.2 NC_001650.1 + 172864 0.74 0.455716
Target:  5'- uGGGaGCUAA-GGGGGaCUGCCCACUc-- -3'
miRNA:   3'- -UCC-CGGUUaCCCCC-GAUGGGUGAuuc -5'
3580 3' -57.2 NC_001650.1 + 127390 0.74 0.455716
Target:  5'- cGGGGCCGAUgGGGGGUUGgCCAa---- -3'
miRNA:   3'- -UCCCGGUUA-CCCCCGAUgGGUgauuc -5'
3580 3' -57.2 NC_001650.1 + 169473 0.73 0.474156
Target:  5'- aGGGGUCA-UGGGGGagUGCCCAUaAAGg -3'
miRNA:   3'- -UCCCGGUuACCCCCg-AUGGGUGaUUC- -5'
3580 3' -57.2 NC_001650.1 + 2766 0.73 0.474156
Target:  5'- aGGGGUCA-UGGGGGagUGCCCAUaAAGg -3'
miRNA:   3'- -UCCCGGUuACCCCCg-AUGGGUGaUUC- -5'
3580 3' -57.2 NC_001650.1 + 6503 0.73 0.512103
Target:  5'- uAGGGaCCcagGGGGaGUUGCCCACUAc- -3'
miRNA:   3'- -UCCC-GGuuaCCCC-CGAUGGGUGAUuc -5'
3580 3' -57.2 NC_001650.1 + 173210 0.73 0.512103
Target:  5'- uAGGGaCCcagGGGGaGUUGCCCACUAc- -3'
miRNA:   3'- -UCCC-GGuuaCCCC-CGAUGGGUGAUuc -5'
3580 3' -57.2 NC_001650.1 + 130080 0.73 0.512103
Target:  5'- gAGGGCCGGggagGGGGGagagccGCCCGCcAAGc -3'
miRNA:   3'- -UCCCGGUUa---CCCCCga----UGGGUGaUUC- -5'
3580 3' -57.2 NC_001650.1 + 129139 0.73 0.521789
Target:  5'- cGGGGCCGAggacacGGGGGCgGCCCuCUucGc -3'
miRNA:   3'- -UCCCGGUUa-----CCCCCGaUGGGuGAuuC- -5'
3580 3' -57.2 NC_001650.1 + 6800 0.72 0.535465
Target:  5'- uGGGCaauaaagcccaugccCAAUGGGGGCUuagggguacuGCCCACUc-- -3'
miRNA:   3'- uCCCG---------------GUUACCCCCGA----------UGGGUGAuuc -5'
3580 3' -57.2 NC_001650.1 + 92837 0.72 0.551246
Target:  5'- aAGGGCCAGgugGaGGGGCU-CCCGgUAc- -3'
miRNA:   3'- -UCCCGGUUa--C-CCCCGAuGGGUgAUuc -5'
3580 3' -57.2 NC_001650.1 + 101807 0.72 0.551246
Target:  5'- uGGGGaaGA--GGGGCUGCCCGCUGGc -3'
miRNA:   3'- -UCCCggUUacCCCCGAUGGGUGAUUc -5'
3580 3' -57.2 NC_001650.1 + 139112 0.72 0.561181
Target:  5'- gGGGGUUAGUGGGGGUauguagugUACCCAg---- -3'
miRNA:   3'- -UCCCGGUUACCCCCG--------AUGGGUgauuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.