miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3580 3' -57.2 NC_001650.1 + 172582 1.08 0.002896
Target:  5'- gAGGGCCAAUGGGGGCUACCCACUAAGc -3'
miRNA:   3'- -UCCCGGUUACCCCCGAUGGGUGAUUC- -5'
3580 3' -57.2 NC_001650.1 + 5875 1.08 0.002896
Target:  5'- gAGGGCCAAUGGGGGCUACCCACUAAGc -3'
miRNA:   3'- -UCCCGGUUACCCCCGAUGGGUGAUUC- -5'
3580 3' -57.2 NC_001650.1 + 7479 0.89 0.053822
Target:  5'- cGGcGGcCCAAUGGGGGCUACCCACUGc- -3'
miRNA:   3'- -UC-CC-GGUUACCCCCGAUGGGUGAUuc -5'
3580 3' -57.2 NC_001650.1 + 174186 0.89 0.053822
Target:  5'- cGGcGGcCCAAUGGGGGCUACCCACUGc- -3'
miRNA:   3'- -UC-CC-GGUUACCCCCGAUGGGUGAUuc -5'
3580 3' -57.2 NC_001650.1 + 174418 0.88 0.059902
Target:  5'- uGGcCCAAUGGGGGCUACCCACUAu- -3'
miRNA:   3'- uCCcGGUUACCCCCGAUGGGUGAUuc -5'
3580 3' -57.2 NC_001650.1 + 7711 0.88 0.059902
Target:  5'- uGGcCCAAUGGGGGCUACCCACUAu- -3'
miRNA:   3'- uCCcGGUUACCCCCGAUGGGUGAUuc -5'
3580 3' -57.2 NC_001650.1 + 17153 0.82 0.149604
Target:  5'- uGGGUU-AUGGGGGCUuCCCACUGAGa -3'
miRNA:   3'- uCCCGGuUACCCCCGAuGGGUGAUUC- -5'
3580 3' -57.2 NC_001650.1 + 183860 0.82 0.149604
Target:  5'- uGGGUU-AUGGGGGCUuCCCACUGAGa -3'
miRNA:   3'- uCCCGGuUACCCCCGAuGGGUGAUUC- -5'
3580 3' -57.2 NC_001650.1 + 173370 0.81 0.16972
Target:  5'- uGGcCCAAUGGGGGCUGCCCAUa--- -3'
miRNA:   3'- uCCcGGUUACCCCCGAUGGGUGauuc -5'
3580 3' -57.2 NC_001650.1 + 6663 0.81 0.16972
Target:  5'- uGGcCCAAUGGGGGCUGCCCAUa--- -3'
miRNA:   3'- uCCcGGUUACCCCCGAUGGGUGauuc -5'
3580 3' -57.2 NC_001650.1 + 172740 0.8 0.201934
Target:  5'- gGGGGCCua-GGGGGcCUGCCCACUc-- -3'
miRNA:   3'- -UCCCGGuuaCCCCC-GAUGGGUGAuuc -5'
3580 3' -57.2 NC_001650.1 + 6033 0.8 0.201934
Target:  5'- gGGGGCCua-GGGGGcCUGCCCACUc-- -3'
miRNA:   3'- -UCCCGGuuaCCCCC-GAUGGGUGAuuc -5'
3580 3' -57.2 NC_001650.1 + 2190 0.79 0.228088
Target:  5'- uGGGUCAGUGGGaGG-UACCCAUUAAGg -3'
miRNA:   3'- uCCCGGUUACCC-CCgAUGGGUGAUUC- -5'
3580 3' -57.2 NC_001650.1 + 168897 0.79 0.228088
Target:  5'- uGGGUCAGUGGGaGG-UACCCAUUAAGg -3'
miRNA:   3'- uCCCGGUUACCC-CCgAUGGGUGAUUC- -5'
3580 3' -57.2 NC_001650.1 + 173960 0.79 0.251028
Target:  5'- uGGcCCAAUGGGGGCUGUCCACUAu- -3'
miRNA:   3'- uCCcGGUUACCCCCGAUGGGUGAUuc -5'
3580 3' -57.2 NC_001650.1 + 7253 0.79 0.251028
Target:  5'- uGGcCCAAUGGGGGCUGUCCACUAu- -3'
miRNA:   3'- uCCcGGUUACCCCCGAUGGGUGAUuc -5'
3580 3' -57.2 NC_001650.1 + 174967 0.78 0.267565
Target:  5'- gGGGGCCAAUGGGGGgccuguggguauuaCUcaauGCCCAgUGGGg -3'
miRNA:   3'- -UCCCGGUUACCCCC--------------GA----UGGGUgAUUC- -5'
3580 3' -57.2 NC_001650.1 + 8260 0.78 0.267565
Target:  5'- gGGGGCCAAUGGGGGgccuguggguauuaCUcaauGCCCAgUGGGg -3'
miRNA:   3'- -UCCCGGUUACCCCC--------------GA----UGGGUgAUUC- -5'
3580 3' -57.2 NC_001650.1 + 7599 0.76 0.346318
Target:  5'- uGGcCCAAUGGGGGCUGuCCCACc--- -3'
miRNA:   3'- uCCcGGUUACCCCCGAU-GGGUGauuc -5'
3580 3' -57.2 NC_001650.1 + 174306 0.76 0.346318
Target:  5'- uGGcCCAAUGGGGGCUGuCCCACc--- -3'
miRNA:   3'- uCCcGGUUACCCCCGAU-GGGUGauuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.