miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3580 3' -57.2 NC_001650.1 + 293 0.66 0.891523
Target:  5'- gAGGGCCccgaggGGGGGUUuCCCGg---- -3'
miRNA:   3'- -UCCCGGuua---CCCCCGAuGGGUgauuc -5'
3580 3' -57.2 NC_001650.1 + 493 0.69 0.712141
Target:  5'- gAGuGGCCAAUGGGGaGC-GCCUAUa--- -3'
miRNA:   3'- -UC-CCGGUUACCCC-CGaUGGGUGauuc -5'
3580 3' -57.2 NC_001650.1 + 1278 0.69 0.751024
Target:  5'- gGGGGCCc--GGGGGUggGCCCAa---- -3'
miRNA:   3'- -UCCCGGuuaCCCCCGa-UGGGUgauuc -5'
3580 3' -57.2 NC_001650.1 + 1650 0.67 0.814781
Target:  5'- uGGGaGCCg--GGGGGCcgGCCUugUGGu -3'
miRNA:   3'- -UCC-CGGuuaCCCCCGa-UGGGugAUUc -5'
3580 3' -57.2 NC_001650.1 + 1772 0.66 0.884772
Target:  5'- uGGaGGCCcuGUGGGaGG-UGCCCAUUAAa -3'
miRNA:   3'- -UC-CCGGu-UACCC-CCgAUGGGUGAUUc -5'
3580 3' -57.2 NC_001650.1 + 2035 0.71 0.601342
Target:  5'- uGGaGGCCAggGGGGaGgUACCCAUgAAGg -3'
miRNA:   3'- -UC-CCGGUuaCCCC-CgAUGGGUGaUUC- -5'
3580 3' -57.2 NC_001650.1 + 2190 0.79 0.228088
Target:  5'- uGGGUCAGUGGGaGG-UACCCAUUAAGg -3'
miRNA:   3'- uCCCGGUUACCC-CCgAUGGGUGAUUC- -5'
3580 3' -57.2 NC_001650.1 + 2766 0.73 0.474156
Target:  5'- aGGGGUCA-UGGGGGagUGCCCAUaAAGg -3'
miRNA:   3'- -UCCCGGUuACCCCCg-AUGGGUGaUUC- -5'
3580 3' -57.2 NC_001650.1 + 2915 0.7 0.692262
Target:  5'- -uGGCCcagGGGGGCUGUCCAUUAAu -3'
miRNA:   3'- ucCCGGuuaCCCCCGAUGGGUGAUUc -5'
3580 3' -57.2 NC_001650.1 + 3481 0.66 0.884772
Target:  5'- -cGGCCAAUGGGaGCaGCCUGCcAGGc -3'
miRNA:   3'- ucCCGGUUACCCcCGaUGGGUGaUUC- -5'
3580 3' -57.2 NC_001650.1 + 4382 0.67 0.839833
Target:  5'- uAGGGCCcguccAAUGGGaGGCcggggACCC-CUGGa -3'
miRNA:   3'- -UCCCGG-----UUACCC-CCGa----UGGGuGAUUc -5'
3580 3' -57.2 NC_001650.1 + 4676 0.68 0.797253
Target:  5'- gGGGGUCcg-GGGGGUcuuaaagACCCuCUAGGa -3'
miRNA:   3'- -UCCCGGuuaCCCCCGa------UGGGuGAUUC- -5'
3580 3' -57.2 NC_001650.1 + 5844 0.75 0.402849
Target:  5'- gGGGGUCuaaGGGGGCcGCCCACUc-- -3'
miRNA:   3'- -UCCCGGuuaCCCCCGaUGGGUGAuuc -5'
3580 3' -57.2 NC_001650.1 + 5875 1.08 0.002896
Target:  5'- gAGGGCCAAUGGGGGCUACCCACUAAGc -3'
miRNA:   3'- -UCCCGGUUACCCCCGAUGGGUGAUUC- -5'
3580 3' -57.2 NC_001650.1 + 6033 0.8 0.201934
Target:  5'- gGGGGCCua-GGGGGcCUGCCCACUc-- -3'
miRNA:   3'- -UCCCGGuuaCCCCC-GAUGGGUGAuuc -5'
3580 3' -57.2 NC_001650.1 + 6157 0.74 0.455716
Target:  5'- uGGGaGCUAA-GGGGGaCUGCCCACUc-- -3'
miRNA:   3'- -UCC-CGGUUaCCCCC-GAUGGGUGAuuc -5'
3580 3' -57.2 NC_001650.1 + 6503 0.73 0.512103
Target:  5'- uAGGGaCCcagGGGGaGUUGCCCACUAc- -3'
miRNA:   3'- -UCCC-GGuuaCCCC-CGAUGGGUGAUuc -5'
3580 3' -57.2 NC_001650.1 + 6663 0.81 0.16972
Target:  5'- uGGcCCAAUGGGGGCUGCCCAUa--- -3'
miRNA:   3'- uCCcGGUUACCCCCGAUGGGUGauuc -5'
3580 3' -57.2 NC_001650.1 + 6800 0.72 0.535465
Target:  5'- uGGGCaauaaagcccaugccCAAUGGGGGCUuagggguacuGCCCACUc-- -3'
miRNA:   3'- uCCCG---------------GUUACCCCCGA----------UGGGUGAuuc -5'
3580 3' -57.2 NC_001650.1 + 6841 0.69 0.751024
Target:  5'- uGGGCCA--GGGGGCUuuauugcCCCAUg--- -3'
miRNA:   3'- uCCCGGUuaCCCCCGAu------GGGUGauuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.