miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3580 3' -57.2 NC_001650.1 + 57930 0.7 0.682245
Target:  5'- aAGGGCgCGGccGGGGGCggcACCCucaGCUGGGc -3'
miRNA:   3'- -UCCCG-GUUa-CCCCCGa--UGGG---UGAUUC- -5'
3580 3' -57.2 NC_001650.1 + 168742 0.71 0.601342
Target:  5'- uGGaGGCCAggGGGGaGgUACCCAUgAAGg -3'
miRNA:   3'- -UC-CCGGUuaCCCC-CgAUGGGUGaUUC- -5'
3580 3' -57.2 NC_001650.1 + 31012 0.71 0.611455
Target:  5'- cAGGGCCuggcugggGcgGGGGGCgcccuCCCACUu-- -3'
miRNA:   3'- -UCCCGG--------UuaCCCCCGau---GGGUGAuuc -5'
3580 3' -57.2 NC_001650.1 + 147678 0.71 0.621583
Target:  5'- cGGGaGCCGcucUGGGGGgUACCUGCUcGGg -3'
miRNA:   3'- -UCC-CGGUu--ACCCCCgAUGGGUGAuUC- -5'
3580 3' -57.2 NC_001650.1 + 21515 0.71 0.631719
Target:  5'- cGGGaCCGG-GGGGGCUA-CUGCUGGGa -3'
miRNA:   3'- uCCC-GGUUaCCCCCGAUgGGUGAUUC- -5'
3580 3' -57.2 NC_001650.1 + 111257 0.7 0.651984
Target:  5'- cAGGGCCAGaaucUGGGGcCUcGCCCGCa--- -3'
miRNA:   3'- -UCCCGGUU----ACCCCcGA-UGGGUGauuc -5'
3580 3' -57.2 NC_001650.1 + 128261 0.7 0.672188
Target:  5'- cGGGCCcGUgcccgaGGGGGUgggGCCCAUgGAGa -3'
miRNA:   3'- uCCCGGuUA------CCCCCGa--UGGGUGaUUC- -5'
3580 3' -57.2 NC_001650.1 + 23752 0.7 0.672188
Target:  5'- -cGGCgCGcgGGGGGCggagACCCGCccGAGg -3'
miRNA:   3'- ucCCG-GUuaCCCCCGa---UGGGUGa-UUC- -5'
3580 3' -57.2 NC_001650.1 + 93344 0.7 0.681241
Target:  5'- cGGGGCCAGUacgagcaccugacGGGGGCgGCCU-UUGGGg -3'
miRNA:   3'- -UCCCGGUUA-------------CCCCCGaUGGGuGAUUC- -5'
3580 3' -57.2 NC_001650.1 + 2035 0.71 0.601342
Target:  5'- uGGaGGCCAggGGGGaGgUACCCAUgAAGg -3'
miRNA:   3'- -UC-CCGGUuaCCCC-CgAUGGGUGaUUC- -5'
3580 3' -57.2 NC_001650.1 + 131915 0.71 0.591251
Target:  5'- cGGGCCAG-GGcGGGCUuCCUGCUGu- -3'
miRNA:   3'- uCCCGGUUaCC-CCCGAuGGGUGAUuc -5'
3580 3' -57.2 NC_001650.1 + 50652 0.71 0.590244
Target:  5'- aGGGGCCGGUgcccgcgGGGGGCcugaccuucUACCUGCUGc- -3'
miRNA:   3'- -UCCCGGUUA-------CCCCCG---------AUGGGUGAUuc -5'
3580 3' -57.2 NC_001650.1 + 183860 0.82 0.149604
Target:  5'- uGGGUU-AUGGGGGCUuCCCACUGAGa -3'
miRNA:   3'- uCCCGGuUACCCCCGAuGGGUGAUUC- -5'
3580 3' -57.2 NC_001650.1 + 2190 0.79 0.228088
Target:  5'- uGGGUCAGUGGGaGG-UACCCAUUAAGg -3'
miRNA:   3'- uCCCGGUUACCC-CCgAUGGGUGAUUC- -5'
3580 3' -57.2 NC_001650.1 + 168897 0.79 0.228088
Target:  5'- uGGGUCAGUGGGaGG-UACCCAUUAAGg -3'
miRNA:   3'- uCCCGGUUACCC-CCgAUGGGUGAUUC- -5'
3580 3' -57.2 NC_001650.1 + 2766 0.73 0.474156
Target:  5'- aGGGGUCA-UGGGGGagUGCCCAUaAAGg -3'
miRNA:   3'- -UCCCGGUuACCCCCg-AUGGGUGaUUC- -5'
3580 3' -57.2 NC_001650.1 + 169473 0.73 0.474156
Target:  5'- aGGGGUCA-UGGGGGagUGCCCAUaAAGg -3'
miRNA:   3'- -UCCCGGUuACCCCCg-AUGGGUGaUUC- -5'
3580 3' -57.2 NC_001650.1 + 130080 0.73 0.512103
Target:  5'- gAGGGCCGGggagGGGGGagagccGCCCGCcAAGc -3'
miRNA:   3'- -UCCCGGUUa---CCCCCga----UGGGUGaUUC- -5'
3580 3' -57.2 NC_001650.1 + 129139 0.73 0.521789
Target:  5'- cGGGGCCGAggacacGGGGGCgGCCCuCUucGc -3'
miRNA:   3'- -UCCCGGUUa-----CCCCCGaUGGGuGAuuC- -5'
3580 3' -57.2 NC_001650.1 + 139112 0.72 0.561181
Target:  5'- gGGGGUUAGUGGGGGUauguagugUACCCAg---- -3'
miRNA:   3'- -UCCCGGUUACCCCCG--------AUGGGUgauuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.