Results 1 - 20 of 136 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3580 | 3' | -57.2 | NC_001650.1 | + | 145745 | 0.66 | 0.877801 |
Target: 5'- cAGGGCC-AUGGcGGGCaggUCCGCcGGGu -3' miRNA: 3'- -UCCCGGuUACC-CCCGau-GGGUGaUUC- -5' |
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3580 | 3' | -57.2 | NC_001650.1 | + | 63972 | 0.66 | 0.884772 |
Target: 5'- uGGGCUAuugGGGGGCgaggGCUUGCa--- -3' miRNA: 3'- uCCCGGUua-CCCCCGa---UGGGUGauuc -5' |
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3580 | 3' | -57.2 | NC_001650.1 | + | 1772 | 0.66 | 0.884772 |
Target: 5'- uGGaGGCCcuGUGGGaGG-UGCCCAUUAAa -3' miRNA: 3'- -UC-CCGGu-UACCC-CCgAUGGGUGAUUc -5' |
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3580 | 3' | -57.2 | NC_001650.1 | + | 17449 | 0.66 | 0.877801 |
Target: 5'- gGGGGUU--UGuGGGGCUGCCUgggaUGAGg -3' miRNA: 3'- -UCCCGGuuAC-CCCCGAUGGGug--AUUC- -5' |
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3580 | 3' | -57.2 | NC_001650.1 | + | 184156 | 0.66 | 0.877801 |
Target: 5'- gGGGGUU--UGuGGGGCUGCCUgggaUGAGg -3' miRNA: 3'- -UCCCGGuuAC-CCCCGAUGGGug--AUUC- -5' |
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3580 | 3' | -57.2 | NC_001650.1 | + | 109265 | 0.66 | 0.877801 |
Target: 5'- cGGGGUggCGAUagugGGGGGCgcCCCGCUc-- -3' miRNA: 3'- -UCCCG--GUUA----CCCCCGauGGGUGAuuc -5' |
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3580 | 3' | -57.2 | NC_001650.1 | + | 174613 | 0.66 | 0.855621 |
Target: 5'- ---cCCAAUGGGGGCUcggguuGCCUggcagACUAAGg -3' miRNA: 3'- ucccGGUUACCCCCGA------UGGG-----UGAUUC- -5' |
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3580 | 3' | -57.2 | NC_001650.1 | + | 107527 | 0.66 | 0.855621 |
Target: 5'- gGGGGUCuccGUGGGGG--ACCUGCUGcAGa -3' miRNA: 3'- -UCCCGGu--UACCCCCgaUGGGUGAU-UC- -5' |
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3580 | 3' | -57.2 | NC_001650.1 | + | 7365 | 0.66 | 0.863221 |
Target: 5'- uGGcCCAAUGGGGaCUGUCCACUAu- -3' miRNA: 3'- uCCcGGUUACCCCcGAUGGGUGAUuc -5' |
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3580 | 3' | -57.2 | NC_001650.1 | + | 168479 | 0.66 | 0.884772 |
Target: 5'- uGGaGGCCcuGUGGGaGG-UGCCCAUUAAa -3' miRNA: 3'- -UC-CCGGu-UACCC-CCgAUGGGUGAUUc -5' |
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3580 | 3' | -57.2 | NC_001650.1 | + | 129226 | 0.66 | 0.884085 |
Target: 5'- gGGGGUCGA-GGGGaaGCUguccgacGCCCACUc-- -3' miRNA: 3'- -UCCCGGUUaCCCC--CGA-------UGGGUGAuuc -5' |
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3580 | 3' | -57.2 | NC_001650.1 | + | 143199 | 0.66 | 0.870616 |
Target: 5'- gGGGGUCAucaGGGGCUGCUCGg---- -3' miRNA: 3'- -UCCCGGUuacCCCCGAUGGGUgauuc -5' |
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3580 | 3' | -57.2 | NC_001650.1 | + | 174072 | 0.66 | 0.863221 |
Target: 5'- uGGcCCAAUGGGGaCUGUCCACUAu- -3' miRNA: 3'- uCCcGGUUACCCCcGAUGGGUGAUuc -5' |
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3580 | 3' | -57.2 | NC_001650.1 | + | 18138 | 0.66 | 0.891523 |
Target: 5'- gGGGGUgGugugGGGGGCaUACUCACc--- -3' miRNA: 3'- -UCCCGgUua--CCCCCG-AUGGGUGauuc -5' |
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3580 | 3' | -57.2 | NC_001650.1 | + | 73173 | 0.66 | 0.855621 |
Target: 5'- uGGGCC-AUGGGGGaCUugugCCACUc-- -3' miRNA: 3'- uCCCGGuUACCCCC-GAug--GGUGAuuc -5' |
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3580 | 3' | -57.2 | NC_001650.1 | + | 130859 | 0.66 | 0.870616 |
Target: 5'- cGaGGCCAAgaccgGGGGGCUggacaagagcGCCC-CcGAGa -3' miRNA: 3'- uC-CCGGUUa----CCCCCGA----------UGGGuGaUUC- -5' |
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3580 | 3' | -57.2 | NC_001650.1 | + | 145495 | 0.66 | 0.863221 |
Target: 5'- aAGGGCC---GGGGGCU-CCUggucaGCUGGa -3' miRNA: 3'- -UCCCGGuuaCCCCCGAuGGG-----UGAUUc -5' |
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3580 | 3' | -57.2 | NC_001650.1 | + | 127491 | 0.66 | 0.855621 |
Target: 5'- uGGGGCCGGggagGGGGGC-GCCgGg---- -3' miRNA: 3'- -UCCCGGUUa---CCCCCGaUGGgUgauuc -5' |
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3580 | 3' | -57.2 | NC_001650.1 | + | 7906 | 0.66 | 0.855621 |
Target: 5'- ---cCCAAUGGGGGCUcggguuGCCUggcagACUAAGg -3' miRNA: 3'- ucccGGUUACCCCCGA------UGGG-----UGAUUC- -5' |
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3580 | 3' | -57.2 | NC_001650.1 | + | 109410 | 0.66 | 0.863221 |
Target: 5'- cGGGGCCGGUGcGuGcGGCUccCCCACa--- -3' miRNA: 3'- -UCCCGGUUAC-C-C-CCGAu-GGGUGauuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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