Results 1 - 20 of 136 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3580 | 3' | -57.2 | NC_001650.1 | + | 172582 | 1.08 | 0.002896 |
Target: 5'- gAGGGCCAAUGGGGGCUACCCACUAAGc -3' miRNA: 3'- -UCCCGGUUACCCCCGAUGGGUGAUUC- -5' |
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3580 | 3' | -57.2 | NC_001650.1 | + | 8144 | 0.76 | 0.354037 |
Target: 5'- gGGGGcCCAAUGGGGGaUGUCCACUAGc -3' miRNA: 3'- -UCCC-GGUUACCCCCgAUGGGUGAUUc -5' |
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3580 | 3' | -57.2 | NC_001650.1 | + | 173491 | 0.75 | 0.402849 |
Target: 5'- uGGcCCAAUGGGGGCUuagggguacuGCCCACUc-- -3' miRNA: 3'- uCCcGGUUACCCCCGA----------UGGGUGAuuc -5' |
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3580 | 3' | -57.2 | NC_001650.1 | + | 155823 | 0.66 | 0.891523 |
Target: 5'- cGGGGUCAcgGGGGcGCgcGCCaACUAc- -3' miRNA: 3'- -UCCCGGUuaCCCC-CGa-UGGgUGAUuc -5' |
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3580 | 3' | -57.2 | NC_001650.1 | + | 174418 | 0.88 | 0.059902 |
Target: 5'- uGGcCCAAUGGGGGCUACCCACUAu- -3' miRNA: 3'- uCCcGGUUACCCCCGAUGGGUGAUuc -5' |
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3580 | 3' | -57.2 | NC_001650.1 | + | 7711 | 0.88 | 0.059902 |
Target: 5'- uGGcCCAAUGGGGGCUACCCACUAu- -3' miRNA: 3'- uCCcGGUUACCCCCGAUGGGUGAUuc -5' |
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3580 | 3' | -57.2 | NC_001650.1 | + | 6663 | 0.81 | 0.16972 |
Target: 5'- uGGcCCAAUGGGGGCUGCCCAUa--- -3' miRNA: 3'- uCCcGGUUACCCCCGAUGGGUGauuc -5' |
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3580 | 3' | -57.2 | NC_001650.1 | + | 172740 | 0.8 | 0.201934 |
Target: 5'- gGGGGCCua-GGGGGcCUGCCCACUc-- -3' miRNA: 3'- -UCCCGGuuaCCCCC-GAUGGGUGAuuc -5' |
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3580 | 3' | -57.2 | NC_001650.1 | + | 7253 | 0.79 | 0.251028 |
Target: 5'- uGGcCCAAUGGGGGCUGUCCACUAu- -3' miRNA: 3'- uCCcGGUUACCCCCGAUGGGUGAUuc -5' |
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3580 | 3' | -57.2 | NC_001650.1 | + | 174851 | 0.76 | 0.354037 |
Target: 5'- gGGGGcCCAAUGGGGGaUGUCCACUAGc -3' miRNA: 3'- -UCCC-GGUUACCCCCgAUGGGUGAUUc -5' |
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3580 | 3' | -57.2 | NC_001650.1 | + | 8260 | 0.78 | 0.267565 |
Target: 5'- gGGGGCCAAUGGGGGgccuguggguauuaCUcaauGCCCAgUGGGg -3' miRNA: 3'- -UCCCGGUUACCCCC--------------GA----UGGGUgAUUC- -5' |
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3580 | 3' | -57.2 | NC_001650.1 | + | 173960 | 0.79 | 0.251028 |
Target: 5'- uGGcCCAAUGGGGGCUGUCCACUAu- -3' miRNA: 3'- uCCcGGUUACCCCCGAUGGGUGAUuc -5' |
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3580 | 3' | -57.2 | NC_001650.1 | + | 5875 | 1.08 | 0.002896 |
Target: 5'- gAGGGCCAAUGGGGGCUACCCACUAAGc -3' miRNA: 3'- -UCCCGGUUACCCCCGAUGGGUGAUUC- -5' |
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3580 | 3' | -57.2 | NC_001650.1 | + | 174306 | 0.76 | 0.346318 |
Target: 5'- uGGcCCAAUGGGGGCUGuCCCACc--- -3' miRNA: 3'- uCCcGGUUACCCCCGAU-GGGUGauuc -5' |
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3580 | 3' | -57.2 | NC_001650.1 | + | 174186 | 0.89 | 0.053822 |
Target: 5'- cGGcGGcCCAAUGGGGGCUACCCACUGc- -3' miRNA: 3'- -UC-CC-GGUUACCCCCGAUGGGUGAUuc -5' |
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3580 | 3' | -57.2 | NC_001650.1 | + | 6033 | 0.8 | 0.201934 |
Target: 5'- gGGGGCCua-GGGGGcCUGCCCACUc-- -3' miRNA: 3'- -UCCCGGuuaCCCCC-GAUGGGUGAuuc -5' |
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3580 | 3' | -57.2 | NC_001650.1 | + | 7599 | 0.76 | 0.346318 |
Target: 5'- uGGcCCAAUGGGGGCUGuCCCACc--- -3' miRNA: 3'- uCCcGGUUACCCCCGAU-GGGUGauuc -5' |
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3580 | 3' | -57.2 | NC_001650.1 | + | 71897 | 0.75 | 0.38611 |
Target: 5'- gGGGGCCAGggacUGGGGGauguUGCCCACc--- -3' miRNA: 3'- -UCCCGGUU----ACCCCCg---AUGGGUGauuc -5' |
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3580 | 3' | -57.2 | NC_001650.1 | + | 7479 | 0.89 | 0.053822 |
Target: 5'- cGGcGGcCCAAUGGGGGCUACCCACUGc- -3' miRNA: 3'- -UC-CC-GGUUACCCCCGAUGGGUGAUuc -5' |
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3580 | 3' | -57.2 | NC_001650.1 | + | 173370 | 0.81 | 0.16972 |
Target: 5'- uGGcCCAAUGGGGGCUGCCCAUa--- -3' miRNA: 3'- uCCcGGUUACCCCCGAUGGGUGauuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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