Results 1 - 20 of 136 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3580 | 3' | -57.2 | NC_001650.1 | + | 184406 | 0.72 | 0.58521 |
Target: 5'- uGGGCCugagaaaauggaGGGGGCgugGCCCACUu-- -3' miRNA: 3'- uCCCGGuua---------CCCCCGa--UGGGUGAuuc -5' |
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3580 | 3' | -57.2 | NC_001650.1 | + | 184156 | 0.66 | 0.877801 |
Target: 5'- gGGGGUU--UGuGGGGCUGCCUgggaUGAGg -3' miRNA: 3'- -UCCCGGuuAC-CCCCGAUGGGug--AUUC- -5' |
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3580 | 3' | -57.2 | NC_001650.1 | + | 183860 | 0.82 | 0.149604 |
Target: 5'- uGGGUU-AUGGGGGCUuCCCACUGAGa -3' miRNA: 3'- uCCCGGuUACCCCCGAuGGGUGAUUC- -5' |
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3580 | 3' | -57.2 | NC_001650.1 | + | 181767 | 0.68 | 0.805217 |
Target: 5'- cGGGCCGcUGGGGGggaagggacggccCcGCCCGCUu-- -3' miRNA: 3'- uCCCGGUuACCCCC-------------GaUGGGUGAuuc -5' |
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3580 | 3' | -57.2 | NC_001650.1 | + | 174967 | 0.78 | 0.267565 |
Target: 5'- gGGGGCCAAUGGGGGgccuguggguauuaCUcaauGCCCAgUGGGg -3' miRNA: 3'- -UCCCGGUUACCCCC--------------GA----UGGGUgAUUC- -5' |
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3580 | 3' | -57.2 | NC_001650.1 | + | 174851 | 0.76 | 0.354037 |
Target: 5'- gGGGGcCCAAUGGGGGaUGUCCACUAGc -3' miRNA: 3'- -UCCC-GGUUACCCCCgAUGGGUGAUUc -5' |
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3580 | 3' | -57.2 | NC_001650.1 | + | 174647 | 0.71 | 0.611455 |
Target: 5'- cGGGcCCAAUGGGGaccuUCCACUAAGu -3' miRNA: 3'- uCCC-GGUUACCCCcgauGGGUGAUUC- -5' |
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3580 | 3' | -57.2 | NC_001650.1 | + | 174613 | 0.66 | 0.855621 |
Target: 5'- ---cCCAAUGGGGGCUcggguuGCCUggcagACUAAGg -3' miRNA: 3'- ucccGGUUACCCCCGA------UGGG-----UGAUUC- -5' |
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3580 | 3' | -57.2 | NC_001650.1 | + | 174418 | 0.88 | 0.059902 |
Target: 5'- uGGcCCAAUGGGGGCUACCCACUAu- -3' miRNA: 3'- uCCcGGUUACCCCCGAUGGGUGAUuc -5' |
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3580 | 3' | -57.2 | NC_001650.1 | + | 174306 | 0.76 | 0.346318 |
Target: 5'- uGGcCCAAUGGGGGCUGuCCCACc--- -3' miRNA: 3'- uCCcGGUUACCCCCGAU-GGGUGauuc -5' |
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3580 | 3' | -57.2 | NC_001650.1 | + | 174186 | 0.89 | 0.053822 |
Target: 5'- cGGcGGcCCAAUGGGGGCUACCCACUGc- -3' miRNA: 3'- -UC-CC-GGUUACCCCCGAUGGGUGAUuc -5' |
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3580 | 3' | -57.2 | NC_001650.1 | + | 174072 | 0.66 | 0.863221 |
Target: 5'- uGGcCCAAUGGGGaCUGUCCACUAu- -3' miRNA: 3'- uCCcGGUUACCCCcGAUGGGUGAUuc -5' |
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3580 | 3' | -57.2 | NC_001650.1 | + | 173960 | 0.79 | 0.251028 |
Target: 5'- uGGcCCAAUGGGGGCUGUCCACUAu- -3' miRNA: 3'- uCCcGGUUACCCCCGAUGGGUGAUuc -5' |
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3580 | 3' | -57.2 | NC_001650.1 | + | 173595 | 0.67 | 0.831658 |
Target: 5'- gGGGGCCGA-GGGGGUacUACCaugGCcaaugAAGg -3' miRNA: 3'- -UCCCGGUUaCCCCCG--AUGGg--UGa----UUC- -5' |
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3580 | 3' | -57.2 | NC_001650.1 | + | 173548 | 0.69 | 0.751024 |
Target: 5'- uGGGCCA--GGGGGCUuuauugcCCCAUg--- -3' miRNA: 3'- uCCCGGUuaCCCCCGAu------GGGUGauuc -5' |
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3580 | 3' | -57.2 | NC_001650.1 | + | 173491 | 0.75 | 0.402849 |
Target: 5'- uGGcCCAAUGGGGGCUuagggguacuGCCCACUc-- -3' miRNA: 3'- uCCcGGUUACCCCCGA----------UGGGUGAuuc -5' |
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3580 | 3' | -57.2 | NC_001650.1 | + | 173370 | 0.81 | 0.16972 |
Target: 5'- uGGcCCAAUGGGGGCUGCCCAUa--- -3' miRNA: 3'- uCCcGGUUACCCCCGAUGGGUGauuc -5' |
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3580 | 3' | -57.2 | NC_001650.1 | + | 173210 | 0.73 | 0.512103 |
Target: 5'- uAGGGaCCcagGGGGaGUUGCCCACUAc- -3' miRNA: 3'- -UCCC-GGuuaCCCC-CGAUGGGUGAUuc -5' |
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3580 | 3' | -57.2 | NC_001650.1 | + | 172864 | 0.74 | 0.455716 |
Target: 5'- uGGGaGCUAA-GGGGGaCUGCCCACUc-- -3' miRNA: 3'- -UCC-CGGUUaCCCCC-GAUGGGUGAuuc -5' |
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3580 | 3' | -57.2 | NC_001650.1 | + | 172740 | 0.8 | 0.201934 |
Target: 5'- gGGGGCCua-GGGGGcCUGCCCACUc-- -3' miRNA: 3'- -UCCCGGuuaCCCCC-GAUGGGUGAuuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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