miRNA display CGI


Results 61 - 80 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3581 3' -56.8 NC_001650.1 + 50542 0.67 0.87708
Target:  5'- -cGAGGuGGCcuuccuggcgguggAgUGCCCGCgCAACCCg -3'
miRNA:   3'- gaUUCC-CCG--------------UgACGGGUGaGUUGGGg -5'
3581 3' -56.8 NC_001650.1 + 97853 0.67 0.872082
Target:  5'- ----cGGGUcacggccaccaGCUGCCCcCUCGcGCCCCa -3'
miRNA:   3'- gauucCCCG-----------UGACGGGuGAGU-UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 31135 0.67 0.872082
Target:  5'- ----cGGGCGgUG-CCAC-CGACCCCg -3'
miRNA:   3'- gauucCCCGUgACgGGUGaGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 63202 0.67 0.872082
Target:  5'- aUGAGGGuCGucUUGCCCACccccaUgGACCCCu -3'
miRNA:   3'- gAUUCCCcGU--GACGGGUG-----AgUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 105616 0.67 0.872082
Target:  5'- -aGAGGGGUACU-UCUACUUAucuGCCUCu -3'
miRNA:   3'- gaUUCCCCGUGAcGGGUGAGU---UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 21965 0.67 0.872082
Target:  5'- -cAGGGGGCGCcGCagCugUUgcuGCCCCc -3'
miRNA:   3'- gaUUCCCCGUGaCGg-GugAGu--UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 129232 0.67 0.867717
Target:  5'- -cGAGGGGaagcuguccgacgccCACUcccuggugGCCCGCUCcGCCgCCa -3'
miRNA:   3'- gaUUCCCC---------------GUGA--------CGGGUGAGuUGG-GG- -5'
3581 3' -56.8 NC_001650.1 + 165752 0.67 0.864766
Target:  5'- -cAAGuGcuGCAgCUGCCCGCUCAacaGCCCUc -3'
miRNA:   3'- gaUUC-Cc-CGU-GACGGGUGAGU---UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 77968 0.67 0.864766
Target:  5'- -cGAGGGGCcgucGC-GCCCAC-CAAgCUCa -3'
miRNA:   3'- gaUUCCCCG----UGaCGGGUGaGUUgGGG- -5'
3581 3' -56.8 NC_001650.1 + 88195 0.67 0.864766
Target:  5'- -aAGGGGGaggggGCCCGCcCAACCUa -3'
miRNA:   3'- gaUUCCCCguga-CGGGUGaGUUGGGg -5'
3581 3' -56.8 NC_001650.1 + 181856 0.67 0.858007
Target:  5'- --uAGGGGCGCUuuccGCCCggggGCUCugcgguuacaucagcACCCCc -3'
miRNA:   3'- gauUCCCCGUGA----CGGG----UGAGu--------------UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 15149 0.67 0.858007
Target:  5'- --uAGGGGCGCUuuccGCCCggggGCUCugcgguuacaucagcACCCCc -3'
miRNA:   3'- gauUCCCCGUGA----CGGG----UGAGu--------------UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 169702 0.67 0.857246
Target:  5'- uUAGGGGGCGuCgcacaGCCCuuuaugggcACUCccccauGACCCCu -3'
miRNA:   3'- gAUUCCCCGU-Ga----CGGG---------UGAG------UUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 117673 0.67 0.857246
Target:  5'- gUGGGGGGCGCUccGCCgCACgcCAACUg- -3'
miRNA:   3'- gAUUCCCCGUGA--CGG-GUGa-GUUGGgg -5'
3581 3' -56.8 NC_001650.1 + 133929 0.67 0.857246
Target:  5'- --uGGGGGCGCccCCCA---GACCCCg -3'
miRNA:   3'- gauUCCCCGUGacGGGUgagUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 111116 0.67 0.857246
Target:  5'- ---cGGGGC-CUGCUCGCcc--CCCCa -3'
miRNA:   3'- gauuCCCCGuGACGGGUGaguuGGGG- -5'
3581 3' -56.8 NC_001650.1 + 2995 0.67 0.857246
Target:  5'- uUAGGGGGCGuCgcacaGCCCuuuaugggcACUCccccauGACCCCu -3'
miRNA:   3'- gAUUCCCCGU-Ga----CGGG---------UGAG------UUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 82273 0.67 0.856483
Target:  5'- -gAGGGGGUcccggaggagggaGCccCCCGCUC-GCCCCa -3'
miRNA:   3'- gaUUCCCCG-------------UGacGGGUGAGuUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 31259 0.67 0.856483
Target:  5'- -aAGGGGGCggaggccAUUGCCgACgcggAGCCCCu -3'
miRNA:   3'- gaUUCCCCG-------UGACGGgUGag--UUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 21380 0.67 0.854951
Target:  5'- -aGGGGGGCgcgcgACuguguacuucuacgUGCCCACguggcagcaCGGCCCCg -3'
miRNA:   3'- gaUUCCCCG-----UG--------------ACGGGUGa--------GUUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.