miRNA display CGI


Results 41 - 60 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3581 3' -56.8 NC_001650.1 + 121471 0.66 0.892759
Target:  5'- ----cGGGCGCcacuuuuacgagUGCCUGCgccgcugCAGCCCCa -3'
miRNA:   3'- gauucCCCGUG------------ACGGGUGa------GUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 136433 0.66 0.892759
Target:  5'- -gAAGcGGGCGCaguccuccucGCCCACgcgCAGgCCCu -3'
miRNA:   3'- gaUUC-CCCGUGa---------CGGGUGa--GUUgGGG- -5'
3581 3' -56.8 NC_001650.1 + 84558 0.66 0.892759
Target:  5'- -cGAGGGGCugagggACUGUCUcgUCAACCUg -3'
miRNA:   3'- gaUUCCCCG------UGACGGGugAGUUGGGg -5'
3581 3' -56.8 NC_001650.1 + 133302 0.66 0.886084
Target:  5'- -gGAGGGG-GCUGCCCAggaGGCgCCg -3'
miRNA:   3'- gaUUCCCCgUGACGGGUgagUUGgGG- -5'
3581 3' -56.8 NC_001650.1 + 124363 0.66 0.886084
Target:  5'- ---uGGGGCGCUGuuCCCAUcggCAggcGCUCCg -3'
miRNA:   3'- gauuCCCCGUGAC--GGGUGa--GU---UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 107634 0.66 0.886084
Target:  5'- gUGGGGaGGCuCUGCUgACUCuAugCCUg -3'
miRNA:   3'- gAUUCC-CCGuGACGGgUGAG-UugGGG- -5'
3581 3' -56.8 NC_001650.1 + 47282 0.66 0.886084
Target:  5'- -cGAGGGGC---GCCCGCgaggaUAGCCCg -3'
miRNA:   3'- gaUUCCCCGugaCGGGUGa----GUUGGGg -5'
3581 3' -56.8 NC_001650.1 + 67325 0.66 0.886084
Target:  5'- --cAGGGGCAC-GUCgCugUCGGcgguCCCCa -3'
miRNA:   3'- gauUCCCCGUGaCGG-GugAGUU----GGGG- -5'
3581 3' -56.8 NC_001650.1 + 175061 0.66 0.886084
Target:  5'- --cGGGGGUgaaUGCCaccccccaCACUCAggACCCCu -3'
miRNA:   3'- gauUCCCCGug-ACGG--------GUGAGU--UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 58552 0.66 0.886084
Target:  5'- --uGGGGGUGucGCCCccCUUGGCCCCg -3'
miRNA:   3'- gauUCCCCGUgaCGGGu-GAGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 8354 0.66 0.886084
Target:  5'- --cGGGGGUgaaUGCCaccccccaCACUCAggACCCCu -3'
miRNA:   3'- gauUCCCCGug-ACGG--------GUGAGU--UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 75460 0.66 0.882664
Target:  5'- -aGAGGGGCugucgcuggaacgGCUGCCCucCUCuggcgaucguguuGCCCg -3'
miRNA:   3'- gaUUCCCCG-------------UGACGGGu-GAGu------------UGGGg -5'
3581 3' -56.8 NC_001650.1 + 138135 0.67 0.87919
Target:  5'- gUGAGGcugaGGCGCUGCCacagAUUCcuGCCCUg -3'
miRNA:   3'- gAUUCC----CCGUGACGGg---UGAGu-UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 129353 0.67 0.87919
Target:  5'- -gAAGaGGGC-C-GCCCccgugucCUCGGCCCCg -3'
miRNA:   3'- gaUUC-CCCGuGaCGGGu------GAGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 111442 0.67 0.87919
Target:  5'- ---uGGGGCAgcauCUGCCUcCUCucuCCCUg -3'
miRNA:   3'- gauuCCCCGU----GACGGGuGAGuu-GGGG- -5'
3581 3' -56.8 NC_001650.1 + 37348 0.67 0.87919
Target:  5'- ---cGGGGUucugcgacgaGCUGgCCGCUCAcaugACCCg -3'
miRNA:   3'- gauuCCCCG----------UGACgGGUGAGU----UGGGg -5'
3581 3' -56.8 NC_001650.1 + 5825 0.67 0.87919
Target:  5'- -aGAGuGGGCAg-GCCCcCUaGGCCCCc -3'
miRNA:   3'- gaUUC-CCCGUgaCGGGuGAgUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 35172 0.67 0.87919
Target:  5'- --cGGGGGUGgUGCCCcacAC-CAGCaCCCu -3'
miRNA:   3'- gauUCCCCGUgACGGG---UGaGUUG-GGG- -5'
3581 3' -56.8 NC_001650.1 + 172532 0.67 0.87919
Target:  5'- -aGAGuGGGCAg-GCCCcCUaGGCCCCc -3'
miRNA:   3'- gaUUC-CCCGUgaCGGGuGAgUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 165559 0.67 0.87919
Target:  5'- --uAGGGGCucGCcGCCUucuUUCAACCCg -3'
miRNA:   3'- gauUCCCCG--UGaCGGGu--GAGUUGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.