miRNA display CGI


Results 21 - 40 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3581 3' -56.8 NC_001650.1 + 59475 0.66 0.911443
Target:  5'- -cGGGGGGCACcuuccUGCCCAggacgcagUCGuCCCUg -3'
miRNA:   3'- gaUUCCCCGUG-----ACGGGUg-------AGUuGGGG- -5'
3581 3' -56.8 NC_001650.1 + 63098 0.66 0.911443
Target:  5'- uCUGGGGGuCGC-GCCCccggguGCUCcggAGCCCCc -3'
miRNA:   3'- -GAUUCCCcGUGaCGGG------UGAG---UUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 108722 0.66 0.910261
Target:  5'- -cGGGGGGCGucaaagacagccuCUuccccgaGCCC-CUCAgguGCCCCg -3'
miRNA:   3'- gaUUCCCCGU-------------GA-------CGGGuGAGU---UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 58858 0.66 0.905442
Target:  5'- ----aGGGCGgaccaccacCUGCCC-CcCAACCCCa -3'
miRNA:   3'- gauucCCCGU---------GACGGGuGaGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 81836 0.66 0.905442
Target:  5'- --cGGGGGaGCUgGCCCGCgcggCGcgcGCCCUg -3'
miRNA:   3'- gauUCCCCgUGA-CGGGUGa---GU---UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 173553 0.66 0.905442
Target:  5'- -cAGGGGGCuuuAUUGCCC---CAugCCCu -3'
miRNA:   3'- gaUUCCCCG---UGACGGGugaGUugGGG- -5'
3581 3' -56.8 NC_001650.1 + 117333 0.66 0.905442
Target:  5'- --cGGGGGCgacgucuccaaGCUGCCC-C-CG-CCCCu -3'
miRNA:   3'- gauUCCCCG-----------UGACGGGuGaGUuGGGG- -5'
3581 3' -56.8 NC_001650.1 + 5947 0.66 0.905442
Target:  5'- uUGAGuGGGCAgUcCCC-CUUAGCuCCCa -3'
miRNA:   3'- gAUUC-CCCGUgAcGGGuGAGUUG-GGG- -5'
3581 3' -56.8 NC_001650.1 + 172653 0.66 0.905442
Target:  5'- gUGAGuGGGCAgUcCCC-CUUAGCuCCCa -3'
miRNA:   3'- gAUUC-CCCGUgAcGGGuGAGUUG-GGG- -5'
3581 3' -56.8 NC_001650.1 + 6846 0.66 0.905442
Target:  5'- -cAGGGGGCuuuAUUGCCC---CAugCCCu -3'
miRNA:   3'- gaUUCCCCG---UGACGGGugaGUugGGG- -5'
3581 3' -56.8 NC_001650.1 + 111405 0.66 0.899213
Target:  5'- --uGGGGGCGCggGCCgC-CUgAGCCgCCu -3'
miRNA:   3'- gauUCCCCGUGa-CGG-GuGAgUUGG-GG- -5'
3581 3' -56.8 NC_001650.1 + 21686 0.66 0.899213
Target:  5'- -gGGGGGGCcCUGCacCCugUCcagggacgucGCCCCc -3'
miRNA:   3'- gaUUCCCCGuGACG--GGugAGu---------UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 45643 0.66 0.899213
Target:  5'- --uAGGcGCcCUGCCCACU-AGCCCa -3'
miRNA:   3'- gauUCCcCGuGACGGGUGAgUUGGGg -5'
3581 3' -56.8 NC_001650.1 + 92044 0.66 0.899213
Target:  5'- ---uGGaGGUGCUGCCCAC-CA-CCgCCu -3'
miRNA:   3'- gauuCC-CCGUGACGGGUGaGUuGG-GG- -5'
3581 3' -56.8 NC_001650.1 + 32235 0.66 0.899213
Target:  5'- -aGGGGGGCAgU-CCC-CUCGuaggucagguacACCCCc -3'
miRNA:   3'- gaUUCCCCGUgAcGGGuGAGU------------UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 156337 0.66 0.899213
Target:  5'- -cGGGGGGCAggggGUgC-CUCAGCCCa -3'
miRNA:   3'- gaUUCCCCGUga--CGgGuGAGUUGGGg -5'
3581 3' -56.8 NC_001650.1 + 96253 0.66 0.892759
Target:  5'- --cGGGGGCGCUGCCgAUgacagCGACagcgaguccUCCg -3'
miRNA:   3'- gauUCCCCGUGACGGgUGa----GUUG---------GGG- -5'
3581 3' -56.8 NC_001650.1 + 121471 0.66 0.892759
Target:  5'- ----cGGGCGCcacuuuuacgagUGCCUGCgccgcugCAGCCCCa -3'
miRNA:   3'- gauucCCCGUG------------ACGGGUGa------GUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 84558 0.66 0.892759
Target:  5'- -cGAGGGGCugagggACUGUCUcgUCAACCUg -3'
miRNA:   3'- gaUUCCCCG------UGACGGGugAGUUGGGg -5'
3581 3' -56.8 NC_001650.1 + 121098 0.66 0.892759
Target:  5'- gCUuGGGGGCGUUGUCgCGCgCcGCCCCc -3'
miRNA:   3'- -GAuUCCCCGUGACGG-GUGaGuUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.