Results 21 - 40 of 228 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3581 | 3' | -56.8 | NC_001650.1 | + | 6539 | 1.12 | 0.001739 |
Target: 5'- gCUAAGGGGCACUGCCCACUCAACCCCa -3' miRNA: 3'- -GAUUCCCCGUGACGGGUGAGUUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 6655 | 0.66 | 0.917214 |
Target: 5'- ---uGGGG-GCUGCCCAUau--CCCCu -3' miRNA: 3'- gauuCCCCgUGACGGGUGaguuGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 6772 | 0.9 | 0.056549 |
Target: 5'- gCUuAGGGGUACUGCCCACUCuACUCCa -3' miRNA: 3'- -GAuUCCCCGUGACGGGUGAGuUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 6846 | 0.66 | 0.905442 |
Target: 5'- -cAGGGGGCuuuAUUGCCC---CAugCCCu -3' miRNA: 3'- gaUUCCCCG---UGACGGGugaGUugGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 7468 | 0.67 | 0.841619 |
Target: 5'- --uGGGGGCuacccACUGCaCC-CUCGgccaauaaagACCCCg -3' miRNA: 3'- gauUCCCCG-----UGACG-GGuGAGU----------UGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 7928 | 0.68 | 0.832706 |
Target: 5'- -aGAGGGGCuAgUGgacauccCCCAUUgGGCCCCc -3' miRNA: 3'- gaUUCCCCG-UgAC-------GGGUGAgUUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 8134 | 0.68 | 0.808205 |
Target: 5'- --uGGGGGa--UGUCCACU-AGCCCCu -3' miRNA: 3'- gauUCCCCgugACGGGUGAgUUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 8252 | 0.68 | 0.825253 |
Target: 5'- aUGGGGGGC-CUGUggguaUUACUCAAUgCCCa -3' miRNA: 3'- gAUUCCCCGuGACG-----GGUGAGUUG-GGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 8354 | 0.66 | 0.886084 |
Target: 5'- --cGGGGGUgaaUGCCaccccccaCACUCAggACCCCu -3' miRNA: 3'- gauUCCCCGug-ACGG--------GUGAGU--UGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 13640 | 0.7 | 0.734481 |
Target: 5'- gCUGAGGGGgaCGCUGCCa----GACCCUg -3' miRNA: 3'- -GAUUCCCC--GUGACGGgugagUUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 14919 | 0.72 | 0.614901 |
Target: 5'- --cGGGGGUGCUGauguaaCCGCagAGCCCCc -3' miRNA: 3'- gauUCCCCGUGACg-----GGUGagUUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 15149 | 0.67 | 0.858007 |
Target: 5'- --uAGGGGCGCUuuccGCCCggggGCUCugcgguuacaucagcACCCCc -3' miRNA: 3'- gauUCCCCGUGA----CGGG----UGAGu--------------UGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 15419 | 0.73 | 0.544083 |
Target: 5'- -gAAGGGGgGa-GCCCGCugcggccUCAACCCCg -3' miRNA: 3'- gaUUCCCCgUgaCGGGUG-------AGUUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 16149 | 0.71 | 0.63507 |
Target: 5'- aCUGAGaaGGC-CUGCCCACU-GACCUCa -3' miRNA: 3'- -GAUUCc-CCGuGACGGGUGAgUUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 16247 | 0.76 | 0.389913 |
Target: 5'- -gGAGGuGGC-CUGCCCACU-GACCUCa -3' miRNA: 3'- gaUUCC-CCGuGACGGGUGAgUUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 17683 | 0.78 | 0.292474 |
Target: 5'- -gAGGGGGCGugGCCCACUU-ACCCCu -3' miRNA: 3'- gaUUCCCCGUgaCGGGUGAGuUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 18186 | 0.68 | 0.808205 |
Target: 5'- gUGGGGGGCGCU-CUUcUUCAcCCCCg -3' miRNA: 3'- gAUUCCCCGUGAcGGGuGAGUuGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 21380 | 0.67 | 0.854951 |
Target: 5'- -aGGGGGGCgcgcgACuguguacuucuacgUGCCCACguggcagcaCGGCCCCg -3' miRNA: 3'- gaUUCCCCG-----UG--------------ACGGGUGa--------GUUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 21686 | 0.66 | 0.899213 |
Target: 5'- -gGGGGGGCcCUGCacCCugUCcagggacgucGCCCCc -3' miRNA: 3'- gaUUCCCCGuGACG--GGugAGu---------UGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 21965 | 0.67 | 0.872082 |
Target: 5'- -cAGGGGGCGCcGCagCugUUgcuGCCCCc -3' miRNA: 3'- gaUUCCCCGUGaCGg-GugAGu--UGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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