miRNA display CGI


Results 21 - 40 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3581 3' -56.8 NC_001650.1 + 63141 0.76 0.373611
Target:  5'- aUGAGGGGCACgUGCCa----GACCCCa -3'
miRNA:   3'- gAUUCCCCGUG-ACGGgugagUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 182954 0.76 0.389913
Target:  5'- -gGAGGuGGC-CUGCCCACU-GACCUCa -3'
miRNA:   3'- gaUUCC-CCGuGACGGGUGAgUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 16247 0.76 0.389913
Target:  5'- -gGAGGuGGC-CUGCCCACU-GACCUCa -3'
miRNA:   3'- gaUUCC-CCGuGACGGGUGAgUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 2920 0.76 0.405825
Target:  5'- --cAGGGGgGCUGUCCAUUaauggagCAGCCCCu -3'
miRNA:   3'- gauUCCCCgUGACGGGUGA-------GUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 169627 0.76 0.405825
Target:  5'- --cAGGGGgGCUGUCCAUUaauggagCAGCCCCu -3'
miRNA:   3'- gauUCCCCgUGACGGGUGA-------GUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 71651 0.75 0.432643
Target:  5'- --uGGGGGgGCUGCUCguACUCGAgCCCg -3'
miRNA:   3'- gauUCCCCgUGACGGG--UGAGUUgGGG- -5'
3581 3' -56.8 NC_001650.1 + 132742 0.75 0.441512
Target:  5'- -cGGGGGGCGCgcguUGCCCAgguaaGACCCCu -3'
miRNA:   3'- gaUUCCCCGUG----ACGGGUgag--UUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 112192 0.74 0.468721
Target:  5'- --cAGGGG-GCUGCCCAcCUUAACCUCc -3'
miRNA:   3'- gauUCCCCgUGACGGGU-GAGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 130153 0.74 0.47798
Target:  5'- --cAGGGGCG-UGCCCGCcaCAGCCUCg -3'
miRNA:   3'- gauUCCCCGUgACGGGUGa-GUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 46387 0.74 0.47798
Target:  5'- ---cGGGGCACcagaUGCgCCGCggCGGCCCCc -3'
miRNA:   3'- gauuCCCCGUG----ACG-GGUGa-GUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 24942 0.74 0.487329
Target:  5'- --cGGGGGUccuGCUGCCCuGCUgGGCCCa -3'
miRNA:   3'- gauUCCCCG---UGACGGG-UGAgUUGGGg -5'
3581 3' -56.8 NC_001650.1 + 59945 0.74 0.506279
Target:  5'- --cGGGGGcCACggGCCC-CUCGacGCCCCu -3'
miRNA:   3'- gauUCCCC-GUGa-CGGGuGAGU--UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 36295 0.73 0.515871
Target:  5'- -cGAGGGGCACUGguaCAcCUCcACCCCc -3'
miRNA:   3'- gaUUCCCCGUGACgg-GU-GAGuUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 135894 0.73 0.535269
Target:  5'- -aGGGGGGCcuCUGCCCGCcCcuCCCUg -3'
miRNA:   3'- gaUUCCCCGu-GACGGGUGaGuuGGGG- -5'
3581 3' -56.8 NC_001650.1 + 15419 0.73 0.544083
Target:  5'- -gAAGGGGgGa-GCCCGCugcggccUCAACCCCg -3'
miRNA:   3'- gaUUCCCCgUgaCGGGUG-------AGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 182126 0.73 0.544083
Target:  5'- -gAAGGGGgGa-GCCCGCugcggccUCAACCCCg -3'
miRNA:   3'- gaUUCCCCgUgaCGGGUG-------AGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 136096 0.73 0.545065
Target:  5'- --cGGGGGCg--GCCUugUCcAGCCCCa -3'
miRNA:   3'- gauUCCCCGugaCGGGugAG-UUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 122060 0.73 0.554917
Target:  5'- ---cGGGGCug-GCCCACaUCAggcGCCCCc -3'
miRNA:   3'- gauuCCCCGugaCGGGUG-AGU---UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 26745 0.73 0.564821
Target:  5'- -gGAGGGGCugUGCgCCGCcuccaggCAGCUCUu -3'
miRNA:   3'- gaUUCCCCGugACG-GGUGa------GUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 181626 0.72 0.574771
Target:  5'- --cGGGGGUGCUGUguaaCCGCagAGCCCCc -3'
miRNA:   3'- gauUCCCCGUGACG----GGUGagUUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.