Results 1 - 20 of 228 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3581 | 3' | -56.8 | NC_001650.1 | + | 173082 | 1.12 | 0.001739 |
Target: 5'- gCUAAGGGGCACUGCCCACUCAACCCCa -3' miRNA: 3'- -GAUUCCCCGUGACGGGUGAGUUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 173246 | 1.12 | 0.001739 |
Target: 5'- gCUAAGGGGCACUGCCCACUCAACCCCa -3' miRNA: 3'- -GAUUCCCCGUGACGGGUGAGUUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 6375 | 1.12 | 0.001739 |
Target: 5'- gCUAAGGGGCACUGCCCACUCAACCCCa -3' miRNA: 3'- -GAUUCCCCGUGACGGGUGAGUUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 6539 | 1.12 | 0.001739 |
Target: 5'- gCUAAGGGGCACUGCCCACUCAACCCCa -3' miRNA: 3'- -GAUUCCCCGUGACGGGUGAGUUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 6152 | 1.04 | 0.005961 |
Target: 5'- gCUAAGGGGgACUGCCCACUCAACCCCa -3' miRNA: 3'- -GAUUCCCCgUGACGGGUGAGUUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 172859 | 1.04 | 0.005961 |
Target: 5'- gCUAAGGGGgACUGCCCACUCAACCCCa -3' miRNA: 3'- -GAUUCCCCgUGACGGGUGAGUUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 172735 | 0.92 | 0.037847 |
Target: 5'- cCUAGGGGGC-CUGCCCACUCuACCCUa -3' miRNA: 3'- -GAUUCCCCGuGACGGGUGAGuUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 6028 | 0.92 | 0.037847 |
Target: 5'- cCUAGGGGGC-CUGCCCACUCuACCCUa -3' miRNA: 3'- -GAUUCCCCGuGACGGGUGAGuUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 173478 | 0.9 | 0.056549 |
Target: 5'- gCUuAGGGGUACUGCCCACUCuACUCCa -3' miRNA: 3'- -GAuUCCCCGUGACGGGUGAGuUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 6772 | 0.9 | 0.056549 |
Target: 5'- gCUuAGGGGUACUGCCCACUCuACUCCa -3' miRNA: 3'- -GAuUCCCCGUGACGGGUGAGuUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 172546 | 0.8 | 0.236864 |
Target: 5'- uCUAAGGGG-GCcGCCCACUCuACCCUg -3' miRNA: 3'- -GAUUCCCCgUGaCGGGUGAGuUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 5839 | 0.8 | 0.236864 |
Target: 5'- uCUAAGGGG-GCcGCCCACUCuACCCUg -3' miRNA: 3'- -GAUUCCCCgUGaCGGGUGAGuUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 17683 | 0.78 | 0.292474 |
Target: 5'- -gAGGGGGCGugGCCCACUU-ACCCCu -3' miRNA: 3'- gaUUCCCCGUgaCGGGUGAGuUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 184390 | 0.78 | 0.292474 |
Target: 5'- -gAGGGGGCGugGCCCACUU-ACCCCu -3' miRNA: 3'- gaUUCCCCGUgaCGGGUGAGuUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 109278 | 0.78 | 0.30614 |
Target: 5'- gUGGGGGGCGC--CCCGCUCGucGCCCUg -3' miRNA: 3'- gAUUCCCCGUGacGGGUGAGU--UGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 172876 | 0.77 | 0.320289 |
Target: 5'- uUGAGuGGGCAgUGCCC-CUUAGCuCCCa -3' miRNA: 3'- gAUUC-CCCGUgACGGGuGAGUUG-GGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 6333 | 0.77 | 0.320289 |
Target: 5'- uUGAGuGGGCAgUGCCC-CUUAGCuCCCa -3' miRNA: 3'- gAUUC-CCCGUgACGGGuGAGUUG-GGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 6169 | 0.77 | 0.320289 |
Target: 5'- uUGAGuGGGCAgUGCCC-CUUAGCuCCCa -3' miRNA: 3'- gAUUC-CCCGUgACGGGuGAGUUG-GGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 173040 | 0.77 | 0.320289 |
Target: 5'- uUGAGuGGGCAgUGCCC-CUUAGCuCCCa -3' miRNA: 3'- gAUUC-CCCGUgACGGGuGAGUUG-GGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 27009 | 0.77 | 0.326085 |
Target: 5'- -gAAGGGGCGCgcggcucccccgGCCCGCUCcucaAACUCCg -3' miRNA: 3'- gaUUCCCCGUGa-----------CGGGUGAG----UUGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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