Results 1 - 20 of 228 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3581 | 3' | -56.8 | NC_001650.1 | + | 182856 | 0.71 | 0.63507 |
Target: 5'- aCUGAGaaGGC-CUGCCCACU-GACCUCa -3' miRNA: 3'- -GAUUCc-CCGuGACGGGUGAgUUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 136096 | 0.73 | 0.545065 |
Target: 5'- --cGGGGGCg--GCCUugUCcAGCCCCa -3' miRNA: 3'- gauUCCCCGugaCGGGugAG-UUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 122060 | 0.73 | 0.554917 |
Target: 5'- ---cGGGGCug-GCCCACaUCAggcGCCCCc -3' miRNA: 3'- gauuCCCCGugaCGGGUG-AGU---UGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 26745 | 0.73 | 0.564821 |
Target: 5'- -gGAGGGGCugUGCgCCGCcuccaggCAGCUCUu -3' miRNA: 3'- gaUUCCCCGugACG-GGUGa------GUUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 181626 | 0.72 | 0.574771 |
Target: 5'- --cGGGGGUGCUGUguaaCCGCagAGCCCCc -3' miRNA: 3'- gauUCCCCGUGACG----GGUGagUUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 14919 | 0.72 | 0.614901 |
Target: 5'- --cGGGGGUGCUGauguaaCCGCagAGCCCCc -3' miRNA: 3'- gauUCCCCGUGACg-----GGUGagUUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 6073 | 0.72 | 0.624983 |
Target: 5'- ---cGGGGCuuuAUUGCCCAa--GGCCCCg -3' miRNA: 3'- gauuCCCCG---UGACGGGUgagUUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 172780 | 0.72 | 0.624983 |
Target: 5'- ---cGGGGCuuuAUUGCCCAa--GGCCCCg -3' miRNA: 3'- gauuCCCCG---UGACGGGUgagUUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 16149 | 0.71 | 0.63507 |
Target: 5'- aCUGAGaaGGC-CUGCCCACU-GACCUCa -3' miRNA: 3'- -GAUUCc-CCGuGACGGGUGAgUUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 135894 | 0.73 | 0.535269 |
Target: 5'- -aGGGGGGCcuCUGCCCGCcCcuCCCUg -3' miRNA: 3'- gaUUCCCCGu-GACGGGUGaGuuGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 24942 | 0.74 | 0.487329 |
Target: 5'- --cGGGGGUccuGCUGCCCuGCUgGGCCCa -3' miRNA: 3'- gauUCCCCG---UGACGGG-UGAgUUGGGg -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 46387 | 0.74 | 0.47798 |
Target: 5'- ---cGGGGCACcagaUGCgCCGCggCGGCCCCc -3' miRNA: 3'- gauuCCCCGUG----ACG-GGUGa-GUUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 6169 | 0.77 | 0.320289 |
Target: 5'- uUGAGuGGGCAgUGCCC-CUUAGCuCCCa -3' miRNA: 3'- gAUUC-CCCGUgACGGGuGAGUUG-GGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 6333 | 0.77 | 0.320289 |
Target: 5'- uUGAGuGGGCAgUGCCC-CUUAGCuCCCa -3' miRNA: 3'- gAUUC-CCCGUgACGGGuGAGUUG-GGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 172876 | 0.77 | 0.320289 |
Target: 5'- uUGAGuGGGCAgUGCCC-CUUAGCuCCCa -3' miRNA: 3'- gAUUC-CCCGUgACGGGuGAGUUG-GGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 173040 | 0.77 | 0.320289 |
Target: 5'- uUGAGuGGGCAgUGCCC-CUUAGCuCCCa -3' miRNA: 3'- gAUUC-CCCGUgACGGGuGAGUUG-GGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 16247 | 0.76 | 0.389913 |
Target: 5'- -gGAGGuGGC-CUGCCCACU-GACCUCa -3' miRNA: 3'- gaUUCC-CCGuGACGGGUGAgUUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 182954 | 0.76 | 0.389913 |
Target: 5'- -gGAGGuGGC-CUGCCCACU-GACCUCa -3' miRNA: 3'- gaUUCC-CCGuGACGGGUGAgUUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 2920 | 0.76 | 0.405825 |
Target: 5'- --cAGGGGgGCUGUCCAUUaauggagCAGCCCCu -3' miRNA: 3'- gauUCCCCgUGACGGGUGA-------GUUGGGG- -5' |
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3581 | 3' | -56.8 | NC_001650.1 | + | 169627 | 0.76 | 0.405825 |
Target: 5'- --cAGGGGgGCUGUCCAUUaauggagCAGCCCCu -3' miRNA: 3'- gauUCCCCgUGACGGGUGA-------GUUGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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