miRNA display CGI


Results 1 - 20 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3581 3' -56.8 NC_001650.1 + 173246 1.12 0.001739
Target:  5'- gCUAAGGGGCACUGCCCACUCAACCCCa -3'
miRNA:   3'- -GAUUCCCCGUGACGGGUGAGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 132742 0.75 0.441512
Target:  5'- -cGGGGGGCGCgcguUGCCCAgguaaGACCCCu -3'
miRNA:   3'- gaUUCCCCGUG----ACGGGUgag--UUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 130153 0.74 0.47798
Target:  5'- --cAGGGGCG-UGCCCGCcaCAGCCUCg -3'
miRNA:   3'- gauUCCCCGUgACGGGUGa-GUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 6655 0.66 0.917214
Target:  5'- ---uGGGG-GCUGCCCAUau--CCCCu -3'
miRNA:   3'- gauuCCCCgUGACGGGUGaguuGGGG- -5'
3581 3' -56.8 NC_001650.1 + 172859 1.04 0.005961
Target:  5'- gCUAAGGGGgACUGCCCACUCAACCCCa -3'
miRNA:   3'- -GAUUCCCCgUGACGGGUGAGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 6152 1.04 0.005961
Target:  5'- gCUAAGGGGgACUGCCCACUCAACCCCa -3'
miRNA:   3'- -GAUUCCCCgUGACGGGUGAGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 6028 0.92 0.037847
Target:  5'- cCUAGGGGGC-CUGCCCACUCuACCCUa -3'
miRNA:   3'- -GAUUCCCCGuGACGGGUGAGuUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 173478 0.9 0.056549
Target:  5'- gCUuAGGGGUACUGCCCACUCuACUCCa -3'
miRNA:   3'- -GAuUCCCCGUGACGGGUGAGuUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 5839 0.8 0.236864
Target:  5'- uCUAAGGGG-GCcGCCCACUCuACCCUg -3'
miRNA:   3'- -GAUUCCCCgUGaCGGGUGAGuUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 71651 0.75 0.432643
Target:  5'- --uGGGGGgGCUGCUCguACUCGAgCCCg -3'
miRNA:   3'- gauUCCCCgUGACGGG--UGAGUUgGGG- -5'
3581 3' -56.8 NC_001650.1 + 17683 0.78 0.292474
Target:  5'- -gAGGGGGCGugGCCCACUU-ACCCCu -3'
miRNA:   3'- gaUUCCCCGUgaCGGGUGAGuUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 172546 0.8 0.236864
Target:  5'- uCUAAGGGG-GCcGCCCACUCuACCCUg -3'
miRNA:   3'- -GAUUCCCCgUGaCGGGUGAGuUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 173082 1.12 0.001739
Target:  5'- gCUAAGGGGCACUGCCCACUCAACCCCa -3'
miRNA:   3'- -GAUUCCCCGUGACGGGUGAGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 27009 0.77 0.326085
Target:  5'- -gAAGGGGCGCgcggcucccccgGCCCGCUCcucaAACUCCg -3'
miRNA:   3'- gaUUCCCCGUGa-----------CGGGUGAG----UUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 6539 1.12 0.001739
Target:  5'- gCUAAGGGGCACUGCCCACUCAACCCCa -3'
miRNA:   3'- -GAUUCCCCGUGACGGGUGAGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 6772 0.9 0.056549
Target:  5'- gCUuAGGGGUACUGCCCACUCuACUCCa -3'
miRNA:   3'- -GAuUCCCCGUGACGGGUGAGuUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 63141 0.76 0.373611
Target:  5'- aUGAGGGGCACgUGCCa----GACCCCa -3'
miRNA:   3'- gAUUCCCCGUG-ACGGgugagUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 112192 0.74 0.468721
Target:  5'- --cAGGGG-GCUGCCCAcCUUAACCUCc -3'
miRNA:   3'- gauUCCCCgUGACGGGU-GAGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 6375 1.12 0.001739
Target:  5'- gCUAAGGGGCACUGCCCACUCAACCCCa -3'
miRNA:   3'- -GAUUCCCCGUGACGGGUGAGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 172735 0.92 0.037847
Target:  5'- cCUAGGGGGC-CUGCCCACUCuACCCUa -3'
miRNA:   3'- -GAUUCCCCGuGACGGGUGAGuUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.