miRNA display CGI


Results 1 - 20 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3581 3' -56.8 NC_001650.1 + 3862 0.66 0.911443
Target:  5'- gUAGGGGGCuaggaaGCCCcCUacuCCCCu -3'
miRNA:   3'- gAUUCCCCGuga---CGGGuGAguuGGGG- -5'
3581 3' -56.8 NC_001650.1 + 58552 0.66 0.886084
Target:  5'- --uGGGGGUGucGCCCccCUUGGCCCCg -3'
miRNA:   3'- gauUCCCCGUgaCGGGu-GAGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 133302 0.66 0.886084
Target:  5'- -gGAGGGG-GCUGCCCAggaGGCgCCg -3'
miRNA:   3'- gaUUCCCCgUGACGGGUgagUUGgGG- -5'
3581 3' -56.8 NC_001650.1 + 6655 0.66 0.917214
Target:  5'- ---uGGGG-GCUGCCCAUau--CCCCu -3'
miRNA:   3'- gauuCCCCgUGACGGGUGaguuGGGG- -5'
3581 3' -56.8 NC_001650.1 + 136433 0.66 0.892759
Target:  5'- -gAAGcGGGCGCaguccuccucGCCCACgcgCAGgCCCu -3'
miRNA:   3'- gaUUC-CCCGUGa---------CGGGUGa--GUUgGGG- -5'
3581 3' -56.8 NC_001650.1 + 5947 0.66 0.905442
Target:  5'- uUGAGuGGGCAgUcCCC-CUUAGCuCCCa -3'
miRNA:   3'- gAUUC-CCCGUgAcGGGuGAGUUG-GGG- -5'
3581 3' -56.8 NC_001650.1 + 121471 0.66 0.892759
Target:  5'- ----cGGGCGCcacuuuuacgagUGCCUGCgccgcugCAGCCCCa -3'
miRNA:   3'- gauucCCCGUG------------ACGGGUGa------GUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 172653 0.66 0.905442
Target:  5'- gUGAGuGGGCAgUcCCC-CUUAGCuCCCa -3'
miRNA:   3'- gAUUC-CCCGUgAcGGGuGAGUUG-GGG- -5'
3581 3' -56.8 NC_001650.1 + 8354 0.66 0.886084
Target:  5'- --cGGGGGUgaaUGCCaccccccaCACUCAggACCCCu -3'
miRNA:   3'- gauUCCCCGug-ACGG--------GUGAGU--UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 22482 0.66 0.911443
Target:  5'- -gGAGcGcGGCGCcGCCCGgcaUgGGCCCCg -3'
miRNA:   3'- gaUUC-C-CCGUGaCGGGUg--AgUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 75460 0.66 0.882664
Target:  5'- -aGAGGGGCugucgcuggaacgGCUGCCCucCUCuggcgaucguguuGCCCg -3'
miRNA:   3'- gaUUCCCCG-------------UGACGGGu-GAGu------------UGGGg -5'
3581 3' -56.8 NC_001650.1 + 92044 0.66 0.899213
Target:  5'- ---uGGaGGUGCUGCCCAC-CA-CCgCCu -3'
miRNA:   3'- gauuCC-CCGUGACGGGUGaGUuGG-GG- -5'
3581 3' -56.8 NC_001650.1 + 108722 0.66 0.910261
Target:  5'- -cGGGGGGCGucaaagacagccuCUuccccgaGCCC-CUCAgguGCCCCg -3'
miRNA:   3'- gaUUCCCCGU-------------GA-------CGGGuGAGU---UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 156337 0.66 0.899213
Target:  5'- -cGGGGGGCAggggGUgC-CUCAGCCCa -3'
miRNA:   3'- gaUUCCCCGUga--CGgGuGAGUUGGGg -5'
3581 3' -56.8 NC_001650.1 + 173553 0.66 0.905442
Target:  5'- -cAGGGGGCuuuAUUGCCC---CAugCCCu -3'
miRNA:   3'- gaUUCCCCG---UGACGGGugaGUugGGG- -5'
3581 3' -56.8 NC_001650.1 + 6846 0.66 0.905442
Target:  5'- -cAGGGGGCuuuAUUGCCC---CAugCCCu -3'
miRNA:   3'- gaUUCCCCG---UGACGGGugaGUugGGG- -5'
3581 3' -56.8 NC_001650.1 + 67325 0.66 0.886084
Target:  5'- --cAGGGGCAC-GUCgCugUCGGcgguCCCCa -3'
miRNA:   3'- gauUCCCCGUGaCGG-GugAGUU----GGGG- -5'
3581 3' -56.8 NC_001650.1 + 21686 0.66 0.899213
Target:  5'- -gGGGGGGCcCUGCacCCugUCcagggacgucGCCCCc -3'
miRNA:   3'- gaUUCCCCGuGACG--GGugAGu---------UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 107634 0.66 0.886084
Target:  5'- gUGGGGaGGCuCUGCUgACUCuAugCCUg -3'
miRNA:   3'- gAUUCC-CCGuGACGGgUGAG-UugGGG- -5'
3581 3' -56.8 NC_001650.1 + 175061 0.66 0.886084
Target:  5'- --cGGGGGUgaaUGCCaccccccaCACUCAggACCCCu -3'
miRNA:   3'- gauUCCCCGug-ACGG--------GUGAGU--UGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.