miRNA display CGI


Results 21 - 40 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3581 3' -56.8 NC_001650.1 + 156337 0.66 0.899213
Target:  5'- -cGGGGGGCAggggGUgC-CUCAGCCCa -3'
miRNA:   3'- gaUUCCCCGUga--CGgGuGAGUUGGGg -5'
3581 3' -56.8 NC_001650.1 + 172653 0.66 0.905442
Target:  5'- gUGAGuGGGCAgUcCCC-CUUAGCuCCCa -3'
miRNA:   3'- gAUUC-CCCGUgAcGGGuGAGUUG-GGG- -5'
3581 3' -56.8 NC_001650.1 + 26552 0.66 0.917214
Target:  5'- -cGGGGGGCgagguguucucGCUGCCCcuGCUCucggGGCUCa -3'
miRNA:   3'- gaUUCCCCG-----------UGACGGG--UGAG----UUGGGg -5'
3581 3' -56.8 NC_001650.1 + 5947 0.66 0.905442
Target:  5'- uUGAGuGGGCAgUcCCC-CUUAGCuCCCa -3'
miRNA:   3'- gAUUC-CCCGUgAcGGGuGAGUUG-GGG- -5'
3581 3' -56.8 NC_001650.1 + 173553 0.66 0.905442
Target:  5'- -cAGGGGGCuuuAUUGCCC---CAugCCCu -3'
miRNA:   3'- gaUUCCCCG---UGACGGGugaGUugGGG- -5'
3581 3' -56.8 NC_001650.1 + 170569 0.66 0.911443
Target:  5'- gUAGGGGGCuaggaaGCCCcCUacuCCCCu -3'
miRNA:   3'- gAUUCCCCGuga---CGGGuGAguuGGGG- -5'
3581 3' -56.8 NC_001650.1 + 175061 0.66 0.886084
Target:  5'- --cGGGGGUgaaUGCCaccccccaCACUCAggACCCCu -3'
miRNA:   3'- gauUCCCCGug-ACGG--------GUGAGU--UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 107634 0.66 0.886084
Target:  5'- gUGGGGaGGCuCUGCUgACUCuAugCCUg -3'
miRNA:   3'- gAUUCC-CCGuGACGGgUGAG-UugGGG- -5'
3581 3' -56.8 NC_001650.1 + 8354 0.66 0.886084
Target:  5'- --cGGGGGUgaaUGCCaccccccaCACUCAggACCCCu -3'
miRNA:   3'- gauUCCCCGug-ACGG--------GUGAGU--UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 133302 0.66 0.886084
Target:  5'- -gGAGGGG-GCUGCCCAggaGGCgCCg -3'
miRNA:   3'- gaUUCCCCgUGACGGGUgagUUGgGG- -5'
3581 3' -56.8 NC_001650.1 + 67325 0.66 0.886084
Target:  5'- --cAGGGGCAC-GUCgCugUCGGcgguCCCCa -3'
miRNA:   3'- gauUCCCCGUGaCGG-GugAGUU----GGGG- -5'
3581 3' -56.8 NC_001650.1 + 89116 0.66 0.911443
Target:  5'- -cGGGGGGCAucCUGCUaCAC-CAcccGCCCUu -3'
miRNA:   3'- gaUUCCCCGU--GACGG-GUGaGU---UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 108722 0.66 0.910261
Target:  5'- -cGGGGGGCGucaaagacagccuCUuccccgaGCCC-CUCAgguGCCCCg -3'
miRNA:   3'- gaUUCCCCGU-------------GA-------CGGGuGAGU---UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 6846 0.66 0.905442
Target:  5'- -cAGGGGGCuuuAUUGCCC---CAugCCCu -3'
miRNA:   3'- gaUUCCCCG---UGACGGGugaGUugGGG- -5'
3581 3' -56.8 NC_001650.1 + 136433 0.66 0.892759
Target:  5'- -gAAGcGGGCGCaguccuccucGCCCACgcgCAGgCCCu -3'
miRNA:   3'- gaUUC-CCCGUGa---------CGGGUGa--GUUgGGG- -5'
3581 3' -56.8 NC_001650.1 + 21686 0.66 0.899213
Target:  5'- -gGGGGGGCcCUGCacCCugUCcagggacgucGCCCCc -3'
miRNA:   3'- gaUUCCCCGuGACG--GGugAGu---------UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 92044 0.66 0.899213
Target:  5'- ---uGGaGGUGCUGCCCAC-CA-CCgCCu -3'
miRNA:   3'- gauuCC-CCGUGACGGGUGaGUuGG-GG- -5'
3581 3' -56.8 NC_001650.1 + 3862 0.66 0.911443
Target:  5'- gUAGGGGGCuaggaaGCCCcCUacuCCCCu -3'
miRNA:   3'- gAUUCCCCGuga---CGGGuGAguuGGGG- -5'
3581 3' -56.8 NC_001650.1 + 52616 0.66 0.917214
Target:  5'- --uGGGGGcCACUgGCCCGggggucCUCGgcACCUCg -3'
miRNA:   3'- gauUCCCC-GUGA-CGGGU------GAGU--UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 134156 0.66 0.917214
Target:  5'- -aAGGGGGCGa---CCGCgggCGGCCCUc -3'
miRNA:   3'- gaUUCCCCGUgacgGGUGa--GUUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.