miRNA display CGI


Results 1 - 20 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3581 3' -56.8 NC_001650.1 + 598 0.68 0.799444
Target:  5'- -gAGGGGGCgaggccggGCUGCCgCcCUCccccgGGCCCCc -3'
miRNA:   3'- gaUUCCCCG--------UGACGG-GuGAG-----UUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 2920 0.76 0.405825
Target:  5'- --cAGGGGgGCUGUCCAUUaauggagCAGCCCCu -3'
miRNA:   3'- gauUCCCCgUGACGGGUGA-------GUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 2995 0.67 0.857246
Target:  5'- uUAGGGGGCGuCgcacaGCCCuuuaugggcACUCccccauGACCCCu -3'
miRNA:   3'- gAUUCCCCGU-Ga----CGGG---------UGAG------UUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 3141 0.71 0.655229
Target:  5'- -gGAGGGGagggGCUGCuCCAUUaauggaCAGCCCCc -3'
miRNA:   3'- gaUUCCCCg---UGACG-GGUGA------GUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 3862 0.66 0.911443
Target:  5'- gUAGGGGGCuaggaaGCCCcCUacuCCCCu -3'
miRNA:   3'- gAUUCCCCGuga---CGGGuGAguuGGGG- -5'
3581 3' -56.8 NC_001650.1 + 3992 0.68 0.833525
Target:  5'- ---cGGGGCggaGCUcGCCCACggaCAGaguCCCCa -3'
miRNA:   3'- gauuCCCCG---UGA-CGGGUGa--GUU---GGGG- -5'
3581 3' -56.8 NC_001650.1 + 4068 0.68 0.834343
Target:  5'- gUAGGGGGCuucCUaGCCCcCUaccagcauugcaacaGACCCCg -3'
miRNA:   3'- gAUUCCCCGu--GA-CGGGuGAg--------------UUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 4208 0.66 0.911443
Target:  5'- ---uGGGGacuCUGUCCgugggcgaGCUCcGCCCCg -3'
miRNA:   3'- gauuCCCCgu-GACGGG--------UGAGuUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 5202 0.68 0.799444
Target:  5'- --uAGGGGCcCUGCCaggcauggggaACUCu-CCCCa -3'
miRNA:   3'- gauUCCCCGuGACGGg----------UGAGuuGGGG- -5'
3581 3' -56.8 NC_001650.1 + 5825 0.67 0.87919
Target:  5'- -aGAGuGGGCAg-GCCCcCUaGGCCCCc -3'
miRNA:   3'- gaUUC-CCCGUgaCGGGuGAgUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 5839 0.8 0.236864
Target:  5'- uCUAAGGGG-GCcGCCCACUCuACCCUg -3'
miRNA:   3'- -GAUUCCCCgUGaCGGGUGAGuUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 5866 0.7 0.734481
Target:  5'- --uGGGGGCua--CCCACUaAGCCCCg -3'
miRNA:   3'- gauUCCCCGugacGGGUGAgUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 5947 0.66 0.905442
Target:  5'- uUGAGuGGGCAgUcCCC-CUUAGCuCCCa -3'
miRNA:   3'- gAUUC-CCCGUgAcGGGuGAGUUG-GGG- -5'
3581 3' -56.8 NC_001650.1 + 6028 0.92 0.037847
Target:  5'- cCUAGGGGGC-CUGCCCACUCuACCCUa -3'
miRNA:   3'- -GAUUCCCCGuGACGGGUGAGuUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 6073 0.72 0.624983
Target:  5'- ---cGGGGCuuuAUUGCCCAa--GGCCCCg -3'
miRNA:   3'- gauuCCCCG---UGACGGGUgagUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 6152 1.04 0.005961
Target:  5'- gCUAAGGGGgACUGCCCACUCAACCCCa -3'
miRNA:   3'- -GAUUCCCCgUGACGGGUGAGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 6169 0.77 0.320289
Target:  5'- uUGAGuGGGCAgUGCCC-CUUAGCuCCCa -3'
miRNA:   3'- gAUUC-CCCGUgACGGGuGAGUUG-GGG- -5'
3581 3' -56.8 NC_001650.1 + 6333 0.77 0.320289
Target:  5'- uUGAGuGGGCAgUGCCC-CUUAGCuCCCa -3'
miRNA:   3'- gAUUC-CCCGUgACGGGuGAGUUG-GGG- -5'
3581 3' -56.8 NC_001650.1 + 6375 1.12 0.001739
Target:  5'- gCUAAGGGGCACUGCCCACUCAACCCCa -3'
miRNA:   3'- -GAUUCCCCGUGACGGGUGAGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 6495 0.71 0.63507
Target:  5'- -cAGGGGGagUUGCCCACU--ACCCCc -3'
miRNA:   3'- gaUUCCCCguGACGGGUGAguUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.