miRNA display CGI


Results 1 - 20 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3581 3' -56.8 NC_001650.1 + 184390 0.78 0.292474
Target:  5'- -gAGGGGGCGugGCCCACUU-ACCCCu -3'
miRNA:   3'- gaUUCCCCGUgaCGGGUGAGuUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 182954 0.76 0.389913
Target:  5'- -gGAGGuGGC-CUGCCCACU-GACCUCa -3'
miRNA:   3'- gaUUCC-CCGuGACGGGUGAgUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 182856 0.71 0.63507
Target:  5'- aCUGAGaaGGC-CUGCCCACU-GACCUCa -3'
miRNA:   3'- -GAUUCc-CCGuGACGGGUGAgUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 182126 0.73 0.544083
Target:  5'- -gAAGGGGgGa-GCCCGCugcggccUCAACCCCg -3'
miRNA:   3'- gaUUCCCCgUgaCGGGUG-------AGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 181856 0.67 0.858007
Target:  5'- --uAGGGGCGCUuuccGCCCggggGCUCugcgguuacaucagcACCCCc -3'
miRNA:   3'- gauUCCCCGUGA----CGGG----UGAGu--------------UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 181626 0.72 0.574771
Target:  5'- --cGGGGGUGCUGUguaaCCGCagAGCCCCc -3'
miRNA:   3'- gauUCCCCGUGACG----GGUGagUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 180347 0.7 0.734481
Target:  5'- gCUGAGGGGgaCGCUGCCa----GACCCUg -3'
miRNA:   3'- -GAUUCCCC--GUGACGGgugagUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 175061 0.66 0.886084
Target:  5'- --cGGGGGUgaaUGCCaccccccaCACUCAggACCCCu -3'
miRNA:   3'- gauUCCCCGug-ACGG--------GUGAGU--UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 174959 0.68 0.825253
Target:  5'- aUGGGGGGC-CUGUggguaUUACUCAAUgCCCa -3'
miRNA:   3'- gAUUCCCCGuGACG-----GGUGAGUUG-GGG- -5'
3581 3' -56.8 NC_001650.1 + 174841 0.68 0.808205
Target:  5'- --uGGGGGa--UGUCCACU-AGCCCCu -3'
miRNA:   3'- gauUCCCCgugACGGGUGAgUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 174635 0.68 0.799444
Target:  5'- -aGAGGGGCuaguggACUccCCCAUUgGGCCCCc -3'
miRNA:   3'- gaUUCCCCG------UGAc-GGGUGAgUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 174175 0.67 0.841619
Target:  5'- --uGGGGGCuacccACUGCaCC-CUCGgccaauaaagACCCCg -3'
miRNA:   3'- gauUCCCCG-----UGACG-GGuGAGU----------UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 173553 0.66 0.905442
Target:  5'- -cAGGGGGCuuuAUUGCCC---CAugCCCu -3'
miRNA:   3'- gaUUCCCCG---UGACGGGugaGUugGGG- -5'
3581 3' -56.8 NC_001650.1 + 173478 0.9 0.056549
Target:  5'- gCUuAGGGGUACUGCCCACUCuACUCCa -3'
miRNA:   3'- -GAuUCCCCGUGACGGGUGAGuUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 173362 0.66 0.917214
Target:  5'- ---uGGGG-GCUGCCCAUau--CCCCu -3'
miRNA:   3'- gauuCCCCgUGACGGGUGaguuGGGG- -5'
3581 3' -56.8 NC_001650.1 + 173246 1.12 0.001739
Target:  5'- gCUAAGGGGCACUGCCCACUCAACCCCa -3'
miRNA:   3'- -GAUUCCCCGUGACGGGUGAGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 173202 0.71 0.63507
Target:  5'- -cAGGGGGagUUGCCCACU--ACCCCc -3'
miRNA:   3'- gaUUCCCCguGACGGGUGAguUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 173082 1.12 0.001739
Target:  5'- gCUAAGGGGCACUGCCCACUCAACCCCa -3'
miRNA:   3'- -GAUUCCCCGUGACGGGUGAGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 173040 0.77 0.320289
Target:  5'- uUGAGuGGGCAgUGCCC-CUUAGCuCCCa -3'
miRNA:   3'- gAUUC-CCCGUgACGGGuGAGUUG-GGG- -5'
3581 3' -56.8 NC_001650.1 + 172876 0.77 0.320289
Target:  5'- uUGAGuGGGCAgUGCCC-CUUAGCuCCCa -3'
miRNA:   3'- gAUUC-CCCGUgACGGGuGAGUUG-GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.