miRNA display CGI


Results 41 - 60 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3581 3' -56.8 NC_001650.1 + 22482 0.66 0.911443
Target:  5'- -gGAGcGcGGCGCcGCCCGgcaUgGGCCCCg -3'
miRNA:   3'- gaUUC-C-CCGUGaCGGGUg--AgUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 22574 0.68 0.832706
Target:  5'- ----cGGGUccuccccGCUGCCCAC-CAcCCCCa -3'
miRNA:   3'- gauucCCCG-------UGACGGGUGaGUuGGGG- -5'
3581 3' -56.8 NC_001650.1 + 22984 0.7 0.731581
Target:  5'- -gAGGGGGUcuucaagaccuucgGCUGCCgGgUCAGCCUg -3'
miRNA:   3'- gaUUCCCCG--------------UGACGGgUgAGUUGGGg -5'
3581 3' -56.8 NC_001650.1 + 23780 0.66 0.916647
Target:  5'- -aGGGGGGCGCUGacaUCAaguccuuuguggcCUCGGCCUUc -3'
miRNA:   3'- gaUUCCCCGUGACg--GGU-------------GAGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 24942 0.74 0.487329
Target:  5'- --cGGGGGUccuGCUGCCCuGCUgGGCCCa -3'
miRNA:   3'- gauUCCCCG---UGACGGG-UGAgUUGGGg -5'
3581 3' -56.8 NC_001650.1 + 26552 0.66 0.917214
Target:  5'- -cGGGGGGCgagguguucucGCUGCCCcuGCUCucggGGCUCa -3'
miRNA:   3'- gaUUCCCCG-----------UGACGGG--UGAG----UUGGGg -5'
3581 3' -56.8 NC_001650.1 + 26745 0.73 0.564821
Target:  5'- -gGAGGGGCugUGCgCCGCcuccaggCAGCUCUu -3'
miRNA:   3'- gaUUCCCCGugACG-GGUGa------GUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 27009 0.77 0.326085
Target:  5'- -gAAGGGGCGCgcggcucccccgGCCCGCUCcucaAACUCCg -3'
miRNA:   3'- gaUUCCCCGUGa-----------CGGGUGAG----UUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 27598 0.7 0.715011
Target:  5'- ----cGGGCG-UGCCCGcCUCGGCCCUc -3'
miRNA:   3'- gauucCCCGUgACGGGU-GAGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 30234 0.68 0.799444
Target:  5'- -gGAGGGGuCGCaguaGCCCAggaggcugacCUCGGCCgCCa -3'
miRNA:   3'- gaUUCCCC-GUGa---CGGGU----------GAGUUGG-GG- -5'
3581 3' -56.8 NC_001650.1 + 30470 0.67 0.849529
Target:  5'- -cAGGGGGguCUcGCCCAUcCcGCCCg -3'
miRNA:   3'- gaUUCCCCguGA-CGGGUGaGuUGGGg -5'
3581 3' -56.8 NC_001650.1 + 31028 0.7 0.712065
Target:  5'- -cGGGGGGCGCccuCCCACUUuuuugacgcgcacaGACCCUc -3'
miRNA:   3'- gaUUCCCCGUGac-GGGUGAG--------------UUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 31135 0.67 0.872082
Target:  5'- ----cGGGCGgUG-CCAC-CGACCCCg -3'
miRNA:   3'- gauucCCCGUgACgGGUGaGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 31259 0.67 0.856483
Target:  5'- -aAGGGGGCggaggccAUUGCCgACgcggAGCCCCu -3'
miRNA:   3'- gaUUCCCCG-------UGACGGgUGag--UUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 31303 0.69 0.772314
Target:  5'- --cGGGGGCGCU--UCAUgCGACCCCa -3'
miRNA:   3'- gauUCCCCGUGAcgGGUGaGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 31480 0.67 0.844805
Target:  5'- uUGAGGGGCuccgcgucggcaaugGCcuccGCCCcCUUcGCCCCa -3'
miRNA:   3'- gAUUCCCCG---------------UGa---CGGGuGAGuUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 32235 0.66 0.899213
Target:  5'- -aGGGGGGCAgU-CCC-CUCGuaggucagguacACCCCc -3'
miRNA:   3'- gaUUCCCCGUgAcGGGuGAGU------------UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 35172 0.67 0.87919
Target:  5'- --cGGGGGUGgUGCCCcacAC-CAGCaCCCu -3'
miRNA:   3'- gauUCCCCGUgACGGG---UGaGUUG-GGG- -5'
3581 3' -56.8 NC_001650.1 + 36295 0.73 0.515871
Target:  5'- -cGAGGGGCACUGguaCAcCUCcACCCCc -3'
miRNA:   3'- gaUUCCCCGUGACgg-GU-GAGuUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 37348 0.67 0.87919
Target:  5'- ---cGGGGUucugcgacgaGCUGgCCGCUCAcaugACCCg -3'
miRNA:   3'- gauuCCCCG----------UGACgGGUGAGU----UGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.