miRNA display CGI


Results 41 - 60 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3581 5' -61.7 NC_001650.1 + 61340 0.69 0.519209
Target:  5'- gGGGGACCCGggggcggcGGGGGAGgcgaGCUC-CUc -3'
miRNA:   3'- aUCCCUGGGU--------CCCCCUCaa--CGGGuGA- -5'
3581 5' -61.7 NC_001650.1 + 81868 0.69 0.518265
Target:  5'- aAGGGacguucccgugacGCCCGcgaacgugacGGGGGAGcugGCCCGCg -3'
miRNA:   3'- aUCCC-------------UGGGU----------CCCCCUCaa-CGGGUGa -5'
3581 5' -61.7 NC_001650.1 + 28662 0.69 0.51638
Target:  5'- gGGGGACCCccaAGGGGGAcagcugcgugguaaGcgGCCC-CUa -3'
miRNA:   3'- aUCCCUGGG---UCCCCCU--------------CaaCGGGuGA- -5'
3581 5' -61.7 NC_001650.1 + 27884 0.69 0.49029
Target:  5'- gAGGGACCCcuacguggugacgGGGGuGGcGGggGCCUACa -3'
miRNA:   3'- aUCCCUGGG-------------UCCC-CC-UCaaCGGGUGa -5'
3581 5' -61.7 NC_001650.1 + 61192 0.69 0.482948
Target:  5'- gAGGGuGCCCcugaccgggcgauguGGGGGGGUUGCCUg-- -3'
miRNA:   3'- aUCCC-UGGGu--------------CCCCCUCAACGGGuga -5'
3581 5' -61.7 NC_001650.1 + 6157 0.69 0.47294
Target:  5'- -uGGGAgCUaAGGGGGAc-UGCCCACUc -3'
miRNA:   3'- auCCCUgGG-UCCCCCUcaACGGGUGA- -5'
3581 5' -61.7 NC_001650.1 + 172864 0.69 0.47294
Target:  5'- -uGGGAgCUaAGGGGGAc-UGCCCACUc -3'
miRNA:   3'- auCCCUgGG-UCCCCCUcaACGGGUGA- -5'
3581 5' -61.7 NC_001650.1 + 59744 0.7 0.455017
Target:  5'- gAGGGGCCCguggcccccGGGGGcGAGgcGCCCcccACg -3'
miRNA:   3'- aUCCCUGGG---------UCCCC-CUCaaCGGG---UGa -5'
3581 5' -61.7 NC_001650.1 + 77045 0.7 0.446195
Target:  5'- --uGGGCCUcGGGGGAGcccgUGUCCACg -3'
miRNA:   3'- aucCCUGGGuCCCCCUCa---ACGGGUGa -5'
3581 5' -61.7 NC_001650.1 + 168172 0.7 0.443567
Target:  5'- aUGGGGGCCCGGGGGGcgggaauagGGUUGUgagguaggcgguugCCAg- -3'
miRNA:   3'- -AUCCCUGGGUCCCCC---------UCAACG--------------GGUga -5'
3581 5' -61.7 NC_001650.1 + 1465 0.7 0.443567
Target:  5'- aUGGGGGCCCGGGGGGcgggaauagGGUUGUgagguaggcgguugCCAg- -3'
miRNA:   3'- -AUCCCUGGGUCCCCC---------UCAACG--------------GGUga -5'
3581 5' -61.7 NC_001650.1 + 68753 0.7 0.437468
Target:  5'- -cGGGucuCCCGGGGGGcGUacuUGCCC-CUg -3'
miRNA:   3'- auCCCu--GGGUCCCCCuCA---ACGGGuGA- -5'
3581 5' -61.7 NC_001650.1 + 158612 0.7 0.42884
Target:  5'- aGGuGGACCCuGGGaGGGGcgGCCCAg- -3'
miRNA:   3'- aUC-CCUGGGuCCC-CCUCaaCGGGUga -5'
3581 5' -61.7 NC_001650.1 + 85440 0.7 0.42884
Target:  5'- aGGGGGCUgAGGGGGuaguAGUUGUUgACUa -3'
miRNA:   3'- aUCCCUGGgUCCCCC----UCAACGGgUGA- -5'
3581 5' -61.7 NC_001650.1 + 30461 0.7 0.42884
Target:  5'- gGGGcGGCUCAGGGGG-GUcucGCCCAUc -3'
miRNA:   3'- aUCC-CUGGGUCCCCCuCAa--CGGGUGa -5'
3581 5' -61.7 NC_001650.1 + 136044 0.7 0.411891
Target:  5'- gAGGGAC--GGGGGGAGgacggUGCCCuGCg -3'
miRNA:   3'- aUCCCUGggUCCCCCUCa----ACGGG-UGa -5'
3581 5' -61.7 NC_001650.1 + 128261 0.71 0.403573
Target:  5'- -cGGGcccguGCCCgAGGGGGuGggGCCCAUg -3'
miRNA:   3'- auCCC-----UGGG-UCCCCCuCaaCGGGUGa -5'
3581 5' -61.7 NC_001650.1 + 21988 0.71 0.378475
Target:  5'- cGGGGACCCcGGGGaGAggccugaccucaaGUUcGCCCGCg -3'
miRNA:   3'- aUCCCUGGGuCCCC-CU-------------CAA-CGGGUGa -5'
3581 5' -61.7 NC_001650.1 + 3982 0.71 0.371387
Target:  5'- gGGGuGGCgCCGGGGcGGAGcucGCCCACg -3'
miRNA:   3'- aUCC-CUG-GGUCCC-CCUCaa-CGGGUGa -5'
3581 5' -61.7 NC_001650.1 + 136608 0.71 0.371387
Target:  5'- aUGGGGuaGCCUauuggcagGGGGGGAGgUGCCCAg- -3'
miRNA:   3'- -AUCCC--UGGG--------UCCCCCUCaACGGGUga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.