miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3581 5' -61.7 NC_001650.1 + 2915 0.67 0.635881
Target:  5'- ---uGGCCCAGGGGG-GcUGUCCAUUa -3'
miRNA:   3'- auccCUGGGUCCCCCuCaACGGGUGA- -5'
3581 5' -61.7 NC_001650.1 + 114849 0.67 0.626017
Target:  5'- aUGGGGuCCCcgAGGGGGA--UGUCCAa- -3'
miRNA:   3'- -AUCCCuGGG--UCCCCCUcaACGGGUga -5'
3581 5' -61.7 NC_001650.1 + 49873 0.67 0.626017
Target:  5'- gUGGGGGCgUAGaGGGGcaagGCCCACc -3'
miRNA:   3'- -AUCCCUGgGUC-CCCCucaaCGGGUGa -5'
3581 5' -61.7 NC_001650.1 + 29059 0.67 0.626017
Target:  5'- gGGGuGGCCgAcguGGGGGAGUaccugggcgcgGCCCGCg -3'
miRNA:   3'- aUCC-CUGGgU---CCCCCUCAa----------CGGGUGa -5'
3581 5' -61.7 NC_001650.1 + 126764 0.67 0.626017
Target:  5'- gAGGGGCCCgggggaaugGGGGGGAGggaugggGCgacgaCACUc -3'
miRNA:   3'- aUCCCUGGG---------UCCCCCUCaa-----CGg----GUGA- -5'
3581 5' -61.7 NC_001650.1 + 17803 0.67 0.600409
Target:  5'- gAGGGAaaaaauucacaccucCCCGGGGGGcg-UGUCUACa -3'
miRNA:   3'- aUCCCU---------------GGGUCCCCCucaACGGGUGa -5'
3581 5' -61.7 NC_001650.1 + 165738 0.67 0.595498
Target:  5'- gGGGGGCCCGGGGcGGcucuuaggccuagGGggGCCUg-- -3'
miRNA:   3'- aUCCCUGGGUCCC-CC-------------UCaaCGGGuga -5'
3581 5' -61.7 NC_001650.1 + 87107 0.67 0.586674
Target:  5'- cAGGGugUUGGGGGG-GaUGCCCuGCUc -3'
miRNA:   3'- aUCCCugGGUCCCCCuCaACGGG-UGA- -5'
3581 5' -61.7 NC_001650.1 + 134526 0.68 0.576899
Target:  5'- gGGGGGCgCCGGGGGGgaagacggguAGUcugGCCCu-- -3'
miRNA:   3'- aUCCCUG-GGUCCCCC----------UCAa--CGGGuga -5'
3581 5' -61.7 NC_001650.1 + 45381 0.68 0.576899
Target:  5'- gGGGGuACCCGgcuccGGGGGAGccugUGaaaCCGCUa -3'
miRNA:   3'- aUCCC-UGGGU-----CCCCCUCa---ACg--GGUGA- -5'
3581 5' -61.7 NC_001650.1 + 118003 0.68 0.575923
Target:  5'- gAGGGugCCggggcagcgggagAGGGGGAGggcGCCgACc -3'
miRNA:   3'- aUCCCugGG-------------UCCCCCUCaa-CGGgUGa -5'
3581 5' -61.7 NC_001650.1 + 127390 0.68 0.56716
Target:  5'- -cGGGGCCgAuGGGGGGUUGgCCAa- -3'
miRNA:   3'- auCCCUGGgUcCCCCUCAACgGGUga -5'
3581 5' -61.7 NC_001650.1 + 168357 0.68 0.557463
Target:  5'- -uGGGAgCCGGGGGGccg-GCCUugUg -3'
miRNA:   3'- auCCCUgGGUCCCCCucaaCGGGugA- -5'
3581 5' -61.7 NC_001650.1 + 1650 0.68 0.557463
Target:  5'- -uGGGAgCCGGGGGGccg-GCCUugUg -3'
miRNA:   3'- auCCCUgGGUCCCCCucaaCGGGugA- -5'
3581 5' -61.7 NC_001650.1 + 28515 0.68 0.547815
Target:  5'- --cGGccGCCCGGGGGGAGUuugUGUCCuGCa -3'
miRNA:   3'- aucCC--UGGGUCCCCCUCA---ACGGG-UGa -5'
3581 5' -61.7 NC_001650.1 + 2765 0.68 0.53822
Target:  5'- gAGGGGuCau-GGGGGAG-UGCCCAUa -3'
miRNA:   3'- aUCCCU-GgguCCCCCUCaACGGGUGa -5'
3581 5' -61.7 NC_001650.1 + 169472 0.68 0.53822
Target:  5'- gAGGGGuCau-GGGGGAG-UGCCCAUa -3'
miRNA:   3'- aUCCCU-GgguCCCCCUCaACGGGUGa -5'
3581 5' -61.7 NC_001650.1 + 39638 0.68 0.537264
Target:  5'- cAGGGACCCgggccaggcgguAGcucugcugagggcGGGGuGUUGCCUACa -3'
miRNA:   3'- aUCCCUGGG------------UC-------------CCCCuCAACGGGUGa -5'
3581 5' -61.7 NC_001650.1 + 23654 0.68 0.528683
Target:  5'- aGGGGGCgCAGGGGGAGgucuuuaCCCucCUg -3'
miRNA:   3'- aUCCCUGgGUCCCCCUCaac----GGGu-GA- -5'
3581 5' -61.7 NC_001650.1 + 130078 0.69 0.519209
Target:  5'- gAGaGGGCCggggaGGGGGGAGagccGCCCGCc -3'
miRNA:   3'- aUC-CCUGGg----UCCCCCUCaa--CGGGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.