Results 21 - 40 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3581 | 5' | -61.7 | NC_001650.1 | + | 6778 | 0.72 | 0.31941 |
Target: 5'- aUGGGGGCUUAGGGGuac-UGCCCACUc -3' miRNA: 3'- -AUCCCUGGGUCCCCcucaACGGGUGA- -5' |
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3581 | 5' | -61.7 | NC_001650.1 | + | 167000 | 0.72 | 0.348423 |
Target: 5'- gAGGGcCCCgAGGGGGGGUUuCCCGg- -3' miRNA: 3'- aUCCCuGGG-UCCCCCUCAAcGGGUga -5' |
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3581 | 5' | -61.7 | NC_001650.1 | + | 293 | 0.72 | 0.348423 |
Target: 5'- gAGGGcCCCgAGGGGGGGUUuCCCGg- -3' miRNA: 3'- aUCCCuGGG-UCCCCCUCAAcGGGUga -5' |
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3581 | 5' | -61.7 | NC_001650.1 | + | 165108 | 0.72 | 0.355964 |
Target: 5'- -uGGGGCCCGGGGGGuggGGUggcggcgGCgCGCUc -3' miRNA: 3'- auCCCUGGGUCCCCC---UCAa------CGgGUGA- -5' |
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3581 | 5' | -61.7 | NC_001650.1 | + | 173678 | 0.71 | 0.366713 |
Target: 5'- gGGGGACCUGGGuugccaggcagacuaGGGGG-UGCUCACUg -3' miRNA: 3'- aUCCCUGGGUCC---------------CCCUCaACGGGUGA- -5' |
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3581 | 5' | -61.7 | NC_001650.1 | + | 6971 | 0.71 | 0.366713 |
Target: 5'- gGGGGACCUGGGuugccaggcagacuaGGGGG-UGCUCACUg -3' miRNA: 3'- aUCCCUGGGUCC---------------CCCUCaACGGGUGA- -5' |
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3581 | 5' | -61.7 | NC_001650.1 | + | 3982 | 0.71 | 0.371387 |
Target: 5'- gGGGuGGCgCCGGGGcGGAGcucGCCCACg -3' miRNA: 3'- aUCC-CUG-GGUCCC-CCUCaa-CGGGUGa -5' |
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3581 | 5' | -61.7 | NC_001650.1 | + | 136608 | 0.71 | 0.371387 |
Target: 5'- aUGGGGuaGCCUauuggcagGGGGGGAGgUGCCCAg- -3' miRNA: 3'- -AUCCC--UGGG--------UCCCCCUCaACGGGUga -5' |
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3581 | 5' | -61.7 | NC_001650.1 | + | 21988 | 0.71 | 0.378475 |
Target: 5'- cGGGGACCCcGGGGaGAggccugaccucaaGUUcGCCCGCg -3' miRNA: 3'- aUCCCUGGGuCCCC-CU-------------CAA-CGGGUGa -5' |
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3581 | 5' | -61.7 | NC_001650.1 | + | 128261 | 0.71 | 0.403573 |
Target: 5'- -cGGGcccguGCCCgAGGGGGuGggGCCCAUg -3' miRNA: 3'- auCCC-----UGGG-UCCCCCuCaaCGGGUGa -5' |
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3581 | 5' | -61.7 | NC_001650.1 | + | 136044 | 0.7 | 0.411891 |
Target: 5'- gAGGGAC--GGGGGGAGgacggUGCCCuGCg -3' miRNA: 3'- aUCCCUGggUCCCCCUCa----ACGGG-UGa -5' |
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3581 | 5' | -61.7 | NC_001650.1 | + | 158612 | 0.7 | 0.42884 |
Target: 5'- aGGuGGACCCuGGGaGGGGcgGCCCAg- -3' miRNA: 3'- aUC-CCUGGGuCCC-CCUCaaCGGGUga -5' |
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3581 | 5' | -61.7 | NC_001650.1 | + | 85440 | 0.7 | 0.42884 |
Target: 5'- aGGGGGCUgAGGGGGuaguAGUUGUUgACUa -3' miRNA: 3'- aUCCCUGGgUCCCCC----UCAACGGgUGA- -5' |
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3581 | 5' | -61.7 | NC_001650.1 | + | 30461 | 0.7 | 0.42884 |
Target: 5'- gGGGcGGCUCAGGGGG-GUcucGCCCAUc -3' miRNA: 3'- aUCC-CUGGGUCCCCCuCAa--CGGGUGa -5' |
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3581 | 5' | -61.7 | NC_001650.1 | + | 68753 | 0.7 | 0.437468 |
Target: 5'- -cGGGucuCCCGGGGGGcGUacuUGCCC-CUg -3' miRNA: 3'- auCCCu--GGGUCCCCCuCA---ACGGGuGA- -5' |
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3581 | 5' | -61.7 | NC_001650.1 | + | 1465 | 0.7 | 0.443567 |
Target: 5'- aUGGGGGCCCGGGGGGcgggaauagGGUUGUgagguaggcgguugCCAg- -3' miRNA: 3'- -AUCCCUGGGUCCCCC---------UCAACG--------------GGUga -5' |
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3581 | 5' | -61.7 | NC_001650.1 | + | 168172 | 0.7 | 0.443567 |
Target: 5'- aUGGGGGCCCGGGGGGcgggaauagGGUUGUgagguaggcgguugCCAg- -3' miRNA: 3'- -AUCCCUGGGUCCCCC---------UCAACG--------------GGUga -5' |
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3581 | 5' | -61.7 | NC_001650.1 | + | 77045 | 0.7 | 0.446195 |
Target: 5'- --uGGGCCUcGGGGGAGcccgUGUCCACg -3' miRNA: 3'- aucCCUGGGuCCCCCUCa---ACGGGUGa -5' |
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3581 | 5' | -61.7 | NC_001650.1 | + | 59744 | 0.7 | 0.455017 |
Target: 5'- gAGGGGCCCguggcccccGGGGGcGAGgcGCCCcccACg -3' miRNA: 3'- aUCCCUGGG---------UCCCC-CUCaaCGGG---UGa -5' |
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3581 | 5' | -61.7 | NC_001650.1 | + | 172864 | 0.69 | 0.47294 |
Target: 5'- -uGGGAgCUaAGGGGGAc-UGCCCACUc -3' miRNA: 3'- auCCCUgGG-UCCCCCUcaACGGGUGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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