miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3581 5' -61.7 NC_001650.1 + 173211 1.06 0.001494
Target:  5'- aUAGGGACCCAGGGGGAGUUGCCCACUa -3'
miRNA:   3'- -AUCCCUGGGUCCCCCUCAACGGGUGA- -5'
3581 5' -61.7 NC_001650.1 + 6504 1.06 0.001494
Target:  5'- aUAGGGACCCAGGGGGAGUUGCCCACUa -3'
miRNA:   3'- -AUCCCUGGGUCCCCCUCAACGGGUGA- -5'
3581 5' -61.7 NC_001650.1 + 172742 0.83 0.06513
Target:  5'- aUGGGGGCCUAGGGGGcc-UGCCCACUc -3'
miRNA:   3'- -AUCCCUGGGUCCCCCucaACGGGUGA- -5'
3581 5' -61.7 NC_001650.1 + 6035 0.83 0.06513
Target:  5'- aUGGGGGCCUAGGGGGcc-UGCCCACUc -3'
miRNA:   3'- -AUCCCUGGGUCCCCCucaACGGGUGA- -5'
3581 5' -61.7 NC_001650.1 + 71898 0.79 0.114392
Target:  5'- cGGGGGCCagggacuGGGGGAuGUUGCCCACc -3'
miRNA:   3'- aUCCCUGGgu-----CCCCCU-CAACGGGUGa -5'
3581 5' -61.7 NC_001650.1 + 174852 0.79 0.126488
Target:  5'- cGGGGGCCCAauGGGGGA--UGUCCACUa -3'
miRNA:   3'- aUCCCUGGGU--CCCCCUcaACGGGUGA- -5'
3581 5' -61.7 NC_001650.1 + 8145 0.79 0.126488
Target:  5'- cGGGGGCCCAauGGGGGA--UGUCCACUa -3'
miRNA:   3'- aUCCCUGGGU--CCCCCUcaACGGGUGA- -5'
3581 5' -61.7 NC_001650.1 + 170685 0.75 0.216459
Target:  5'- cUAGGGguggcGCCCGGGGcGGAGcucGCCCACg -3'
miRNA:   3'- -AUCCC-----UGGGUCCC-CCUCaa-CGGGUGa -5'
3581 5' -61.7 NC_001650.1 + 167529 0.75 0.226918
Target:  5'- aUGGGGGCCC-GGGGGAGggcggcaGCCCGg- -3'
miRNA:   3'- -AUCCCUGGGuCCCCCUCaa-----CGGGUga -5'
3581 5' -61.7 NC_001650.1 + 132756 0.75 0.237802
Target:  5'- gGGGGcgcgucGCCCGGGGGGcgcgcGUUGCCCAg- -3'
miRNA:   3'- aUCCC------UGGGUCCCCCu----CAACGGGUga -5'
3581 5' -61.7 NC_001650.1 + 136500 0.74 0.249119
Target:  5'- gGGGGGCugugaauucaCCGGGGGGAggGUUGCCCGa- -3'
miRNA:   3'- aUCCCUG----------GGUCCCCCU--CAACGGGUga -5'
3581 5' -61.7 NC_001650.1 + 12497 0.73 0.292248
Target:  5'- aUGGGGGuCCCuGGGaGGGAGgaUGCCCACc -3'
miRNA:   3'- -AUCCCU-GGG-UCC-CCCUCa-ACGGGUGa -5'
3581 5' -61.7 NC_001650.1 + 179204 0.73 0.292248
Target:  5'- aUGGGGGuCCCuGGGaGGGAGgaUGCCCACc -3'
miRNA:   3'- -AUCCCU-GGG-UCC-CCCUCa-ACGGGUGa -5'
3581 5' -61.7 NC_001650.1 + 6250 0.73 0.292248
Target:  5'- aUGGGGACCgAGGGGGAccuggGUUGCUagGCa -3'
miRNA:   3'- -AUCCCUGGgUCCCCCU-----CAACGGg-UGa -5'
3581 5' -61.7 NC_001650.1 + 172957 0.73 0.292248
Target:  5'- aUGGGGACCgAGGGGGAccuggGUUGCUagGCa -3'
miRNA:   3'- -AUCCCUGGgUCCCCCU-----CAACGGg-UGa -5'
3581 5' -61.7 NC_001650.1 + 1280 0.73 0.298865
Target:  5'- aUGGGGGCCCGGGGGuGG--GCCCAa- -3'
miRNA:   3'- -AUCCCUGGGUCCCCcUCaaCGGGUga -5'
3581 5' -61.7 NC_001650.1 + 822 0.73 0.298865
Target:  5'- aUGGGGGCCC-GGGGGAGggcggcaGCCgGCc -3'
miRNA:   3'- -AUCCCUGGGuCCCCCUCaa-----CGGgUGa -5'
3581 5' -61.7 NC_001650.1 + 167987 0.73 0.298865
Target:  5'- aUGGGGGCCCGGGGGuGG--GCCCAa- -3'
miRNA:   3'- -AUCCCUGGGUCCCCcUCaaCGGGUga -5'
3581 5' -61.7 NC_001650.1 + 143301 0.73 0.312446
Target:  5'- cGGGGAgCCCGGGGaGGAGgaGCUCAg- -3'
miRNA:   3'- aUCCCU-GGGUCCC-CCUCaaCGGGUga -5'
3581 5' -61.7 NC_001650.1 + 173484 0.72 0.31941
Target:  5'- aUGGGGGCUUAGGGGuac-UGCCCACUc -3'
miRNA:   3'- -AUCCCUGGGUCCCCcucaACGGGUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.