miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3581 5' -61.7 NC_001650.1 + 19 0.66 0.653623
Target:  5'- gAGGGGcaaaagacCCCGGGGGGAGagaacacggggGgCCACa -3'
miRNA:   3'- aUCCCU--------GGGUCCCCCUCaa---------CgGGUGa -5'
3581 5' -61.7 NC_001650.1 + 293 0.72 0.348423
Target:  5'- gAGGGcCCCgAGGGGGGGUUuCCCGg- -3'
miRNA:   3'- aUCCCuGGG-UCCCCCUCAAcGGGUga -5'
3581 5' -61.7 NC_001650.1 + 822 0.73 0.298865
Target:  5'- aUGGGGGCCC-GGGGGAGggcggcaGCCgGCc -3'
miRNA:   3'- -AUCCCUGGGuCCCCCUCaa-----CGGgUGa -5'
3581 5' -61.7 NC_001650.1 + 1280 0.73 0.298865
Target:  5'- aUGGGGGCCCGGGGGuGG--GCCCAa- -3'
miRNA:   3'- -AUCCCUGGGUCCCCcUCaaCGGGUga -5'
3581 5' -61.7 NC_001650.1 + 1465 0.7 0.443567
Target:  5'- aUGGGGGCCCGGGGGGcgggaauagGGUUGUgagguaggcgguugCCAg- -3'
miRNA:   3'- -AUCCCUGGGUCCCCC---------UCAACG--------------GGUga -5'
3581 5' -61.7 NC_001650.1 + 1650 0.68 0.557463
Target:  5'- -uGGGAgCCGGGGGGccg-GCCUugUg -3'
miRNA:   3'- auCCCUgGGUCCCCCucaaCGGGugA- -5'
3581 5' -61.7 NC_001650.1 + 1772 0.67 0.635881
Target:  5'- -uGGaGGCCCuGuGGGAGgUGCCCAUUa -3'
miRNA:   3'- auCC-CUGGGuCcCCCUCaACGGGUGA- -5'
3581 5' -61.7 NC_001650.1 + 2765 0.68 0.53822
Target:  5'- gAGGGGuCau-GGGGGAG-UGCCCAUa -3'
miRNA:   3'- aUCCCU-GgguCCCCCUCaACGGGUGa -5'
3581 5' -61.7 NC_001650.1 + 2915 0.67 0.635881
Target:  5'- ---uGGCCCAGGGGG-GcUGUCCAUUa -3'
miRNA:   3'- auccCUGGGUCCCCCuCaACGGGUGA- -5'
3581 5' -61.7 NC_001650.1 + 3982 0.71 0.371387
Target:  5'- gGGGuGGCgCCGGGGcGGAGcucGCCCACg -3'
miRNA:   3'- aUCC-CUG-GGUCCC-CCUCaa-CGGGUGa -5'
3581 5' -61.7 NC_001650.1 + 5867 0.66 0.674255
Target:  5'- aUGGGGGcuacccacuaagcCCCGGGGgucuaaGGGGgccGCCCACUc -3'
miRNA:   3'- -AUCCCU-------------GGGUCCC------CCUCaa-CGGGUGA- -5'
3581 5' -61.7 NC_001650.1 + 6035 0.83 0.06513
Target:  5'- aUGGGGGCCUAGGGGGcc-UGCCCACUc -3'
miRNA:   3'- -AUCCCUGGGUCCCCCucaACGGGUGA- -5'
3581 5' -61.7 NC_001650.1 + 6157 0.69 0.47294
Target:  5'- -uGGGAgCUaAGGGGGAc-UGCCCACUc -3'
miRNA:   3'- auCCCUgGG-UCCCCCUcaACGGGUGA- -5'
3581 5' -61.7 NC_001650.1 + 6250 0.73 0.292248
Target:  5'- aUGGGGACCgAGGGGGAccuggGUUGCUagGCa -3'
miRNA:   3'- -AUCCCUGGgUCCCCCU-----CAACGGg-UGa -5'
3581 5' -61.7 NC_001650.1 + 6504 1.06 0.001494
Target:  5'- aUAGGGACCCAGGGGGAGUUGCCCACUa -3'
miRNA:   3'- -AUCCCUGGGUCCCCCUCAACGGGUGA- -5'
3581 5' -61.7 NC_001650.1 + 6778 0.72 0.31941
Target:  5'- aUGGGGGCUUAGGGGuac-UGCCCACUc -3'
miRNA:   3'- -AUCCCUGGGUCCCCcucaACGGGUGA- -5'
3581 5' -61.7 NC_001650.1 + 6971 0.71 0.366713
Target:  5'- gGGGGACCUGGGuugccaggcagacuaGGGGG-UGCUCACUg -3'
miRNA:   3'- aUCCCUGGGUCC---------------CCCUCaACGGGUGA- -5'
3581 5' -61.7 NC_001650.1 + 8145 0.79 0.126488
Target:  5'- cGGGGGCCCAauGGGGGA--UGUCCACUa -3'
miRNA:   3'- aUCCCUGGGU--CCCCCUcaACGGGUGA- -5'
3581 5' -61.7 NC_001650.1 + 8261 0.66 0.664443
Target:  5'- cGGGGGCCaauGGGGGGccuGUggguauuacucaaUGCCCAgUg -3'
miRNA:   3'- aUCCCUGGg--UCCCCCu--CA-------------ACGGGUgA- -5'
3581 5' -61.7 NC_001650.1 + 12497 0.73 0.292248
Target:  5'- aUGGGGGuCCCuGGGaGGGAGgaUGCCCACc -3'
miRNA:   3'- -AUCCCU-GGG-UCC-CCCUCa-ACGGGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.