Results 21 - 40 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3581 | 5' | -61.7 | NC_001650.1 | + | 17699 | 0.66 | 0.665426 |
Target: 5'- --uGGGCCUgagaaaauggAGGGGGcGUgGCCCACUu -3' miRNA: 3'- aucCCUGGG----------UCCCCCuCAaCGGGUGA- -5' |
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3581 | 5' | -61.7 | NC_001650.1 | + | 17803 | 0.67 | 0.600409 |
Target: 5'- gAGGGAaaaaauucacaccucCCCGGGGGGcg-UGUCUACa -3' miRNA: 3'- aUCCCU---------------GGGUCCCCCucaACGGGUGa -5' |
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3581 | 5' | -61.7 | NC_001650.1 | + | 21988 | 0.71 | 0.378475 |
Target: 5'- cGGGGACCCcGGGGaGAggccugaccucaaGUUcGCCCGCg -3' miRNA: 3'- aUCCCUGGGuCCCC-CU-------------CAA-CGGGUGa -5' |
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3581 | 5' | -61.7 | NC_001650.1 | + | 23654 | 0.68 | 0.528683 |
Target: 5'- aGGGGGCgCAGGGGGAGgucuuuaCCCucCUg -3' miRNA: 3'- aUCCCUGgGUCCCCCUCaac----GGGu-GA- -5' |
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3581 | 5' | -61.7 | NC_001650.1 | + | 27884 | 0.69 | 0.49029 |
Target: 5'- gAGGGACCCcuacguggugacgGGGGuGGcGGggGCCUACa -3' miRNA: 3'- aUCCCUGGG-------------UCCC-CC-UCaaCGGGUGa -5' |
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3581 | 5' | -61.7 | NC_001650.1 | + | 28515 | 0.68 | 0.547815 |
Target: 5'- --cGGccGCCCGGGGGGAGUuugUGUCCuGCa -3' miRNA: 3'- aucCC--UGGGUCCCCCUCA---ACGGG-UGa -5' |
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3581 | 5' | -61.7 | NC_001650.1 | + | 28662 | 0.69 | 0.51638 |
Target: 5'- gGGGGACCCccaAGGGGGAcagcugcgugguaaGcgGCCC-CUa -3' miRNA: 3'- aUCCCUGGG---UCCCCCU--------------CaaCGGGuGA- -5' |
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3581 | 5' | -61.7 | NC_001650.1 | + | 29059 | 0.67 | 0.626017 |
Target: 5'- gGGGuGGCCgAcguGGGGGAGUaccugggcgcgGCCCGCg -3' miRNA: 3'- aUCC-CUGGgU---CCCCCUCAa----------CGGGUGa -5' |
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3581 | 5' | -61.7 | NC_001650.1 | + | 30461 | 0.7 | 0.42884 |
Target: 5'- gGGGcGGCUCAGGGGG-GUcucGCCCAUc -3' miRNA: 3'- aUCC-CUGGGUCCCCCuCAa--CGGGUGa -5' |
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3581 | 5' | -61.7 | NC_001650.1 | + | 31268 | 0.66 | 0.645742 |
Target: 5'- cAGGGACUCgAGcGGGGAGggucUGUgCGCg -3' miRNA: 3'- aUCCCUGGG-UC-CCCCUCa---ACGgGUGa -5' |
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3581 | 5' | -61.7 | NC_001650.1 | + | 39638 | 0.68 | 0.537264 |
Target: 5'- cAGGGACCCgggccaggcgguAGcucugcugagggcGGGGuGUUGCCUACa -3' miRNA: 3'- aUCCCUGGG------------UC-------------CCCCuCAACGGGUGa -5' |
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3581 | 5' | -61.7 | NC_001650.1 | + | 45381 | 0.68 | 0.576899 |
Target: 5'- gGGGGuACCCGgcuccGGGGGAGccugUGaaaCCGCUa -3' miRNA: 3'- aUCCC-UGGGU-----CCCCCUCa---ACg--GGUGA- -5' |
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3581 | 5' | -61.7 | NC_001650.1 | + | 49873 | 0.67 | 0.626017 |
Target: 5'- gUGGGGGCgUAGaGGGGcaagGCCCACc -3' miRNA: 3'- -AUCCCUGgGUC-CCCCucaaCGGGUGa -5' |
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3581 | 5' | -61.7 | NC_001650.1 | + | 50911 | 0.66 | 0.674255 |
Target: 5'- aAGGugcacguGACCCAGGGGGucaccUGCCC-Cg -3' miRNA: 3'- aUCC-------CUGGGUCCCCCuca--ACGGGuGa -5' |
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3581 | 5' | -61.7 | NC_001650.1 | + | 59744 | 0.7 | 0.455017 |
Target: 5'- gAGGGGCCCguggcccccGGGGGcGAGgcGCCCcccACg -3' miRNA: 3'- aUCCCUGGG---------UCCCC-CUCaaCGGG---UGa -5' |
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3581 | 5' | -61.7 | NC_001650.1 | + | 61192 | 0.69 | 0.482948 |
Target: 5'- gAGGGuGCCCcugaccgggcgauguGGGGGGGUUGCCUg-- -3' miRNA: 3'- aUCCC-UGGGu--------------CCCCCUCAACGGGuga -5' |
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3581 | 5' | -61.7 | NC_001650.1 | + | 61340 | 0.69 | 0.519209 |
Target: 5'- gGGGGACCCGggggcggcGGGGGAGgcgaGCUC-CUc -3' miRNA: 3'- aUCCCUGGGU--------CCCCCUCaa--CGGGuGA- -5' |
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3581 | 5' | -61.7 | NC_001650.1 | + | 68753 | 0.7 | 0.437468 |
Target: 5'- -cGGGucuCCCGGGGGGcGUacuUGCCC-CUg -3' miRNA: 3'- auCCCu--GGGUCCCCCuCA---ACGGGuGA- -5' |
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3581 | 5' | -61.7 | NC_001650.1 | + | 71898 | 0.79 | 0.114392 |
Target: 5'- cGGGGGCCagggacuGGGGGAuGUUGCCCACc -3' miRNA: 3'- aUCCCUGGgu-----CCCCCU-CAACGGGUGa -5' |
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3581 | 5' | -61.7 | NC_001650.1 | + | 77045 | 0.7 | 0.446195 |
Target: 5'- --uGGGCCUcGGGGGAGcccgUGUCCACg -3' miRNA: 3'- aucCCUGGGuCCCCCUCa---ACGGGUGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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