miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3581 5' -61.7 NC_001650.1 + 184406 0.66 0.665426
Target:  5'- --uGGGCCUgagaaaauggAGGGGGcGUgGCCCACUu -3'
miRNA:   3'- aucCCUGGG----------UCCCCCuCAaCGGGUGA- -5'
3581 5' -61.7 NC_001650.1 + 179204 0.73 0.292248
Target:  5'- aUGGGGGuCCCuGGGaGGGAGgaUGCCCACc -3'
miRNA:   3'- -AUCCCU-GGG-UCC-CCCUCa-ACGGGUGa -5'
3581 5' -61.7 NC_001650.1 + 174968 0.66 0.664443
Target:  5'- cGGGGGCCaauGGGGGGccuGUggguauuacucaaUGCCCAgUg -3'
miRNA:   3'- aUCCCUGGg--UCCCCCu--CA-------------ACGGGUgA- -5'
3581 5' -61.7 NC_001650.1 + 174852 0.79 0.126488
Target:  5'- cGGGGGCCCAauGGGGGA--UGUCCACUa -3'
miRNA:   3'- aUCCCUGGGU--CCCCCUcaACGGGUGA- -5'
3581 5' -61.7 NC_001650.1 + 173678 0.71 0.366713
Target:  5'- gGGGGACCUGGGuugccaggcagacuaGGGGG-UGCUCACUg -3'
miRNA:   3'- aUCCCUGGGUCC---------------CCCUCaACGGGUGA- -5'
3581 5' -61.7 NC_001650.1 + 173484 0.72 0.31941
Target:  5'- aUGGGGGCUUAGGGGuac-UGCCCACUc -3'
miRNA:   3'- -AUCCCUGGGUCCCCcucaACGGGUGA- -5'
3581 5' -61.7 NC_001650.1 + 173211 1.06 0.001494
Target:  5'- aUAGGGACCCAGGGGGAGUUGCCCACUa -3'
miRNA:   3'- -AUCCCUGGGUCCCCCUCAACGGGUGA- -5'
3581 5' -61.7 NC_001650.1 + 172957 0.73 0.292248
Target:  5'- aUGGGGACCgAGGGGGAccuggGUUGCUagGCa -3'
miRNA:   3'- -AUCCCUGGgUCCCCCU-----CAACGGg-UGa -5'
3581 5' -61.7 NC_001650.1 + 172864 0.69 0.47294
Target:  5'- -uGGGAgCUaAGGGGGAc-UGCCCACUc -3'
miRNA:   3'- auCCCUgGG-UCCCCCUcaACGGGUGA- -5'
3581 5' -61.7 NC_001650.1 + 172742 0.83 0.06513
Target:  5'- aUGGGGGCCUAGGGGGcc-UGCCCACUc -3'
miRNA:   3'- -AUCCCUGGGUCCCCCucaACGGGUGA- -5'
3581 5' -61.7 NC_001650.1 + 172574 0.66 0.674255
Target:  5'- aUGGGGGcuacccacuaagcCCCGGGGgucuaaGGGGgccGCCCACUc -3'
miRNA:   3'- -AUCCCU-------------GGGUCCC------CCUCaa-CGGGUGA- -5'
3581 5' -61.7 NC_001650.1 + 170685 0.75 0.216459
Target:  5'- cUAGGGguggcGCCCGGGGcGGAGcucGCCCACg -3'
miRNA:   3'- -AUCCC-----UGGGUCCC-CCUCaa-CGGGUGa -5'
3581 5' -61.7 NC_001650.1 + 169622 0.67 0.635881
Target:  5'- ---uGGCCCAGGGGG-GcUGUCCAUUa -3'
miRNA:   3'- auccCUGGGUCCCCCuCaACGGGUGA- -5'
3581 5' -61.7 NC_001650.1 + 169472 0.68 0.53822
Target:  5'- gAGGGGuCau-GGGGGAG-UGCCCAUa -3'
miRNA:   3'- aUCCCU-GgguCCCCCUCaACGGGUGa -5'
3581 5' -61.7 NC_001650.1 + 168479 0.67 0.635881
Target:  5'- -uGGaGGCCCuGuGGGAGgUGCCCAUUa -3'
miRNA:   3'- auCC-CUGGGuCcCCCUCaACGGGUGA- -5'
3581 5' -61.7 NC_001650.1 + 168357 0.68 0.557463
Target:  5'- -uGGGAgCCGGGGGGccg-GCCUugUg -3'
miRNA:   3'- auCCCUgGGUCCCCCucaaCGGGugA- -5'
3581 5' -61.7 NC_001650.1 + 168172 0.7 0.443567
Target:  5'- aUGGGGGCCCGGGGGGcgggaauagGGUUGUgagguaggcgguugCCAg- -3'
miRNA:   3'- -AUCCCUGGGUCCCCC---------UCAACG--------------GGUga -5'
3581 5' -61.7 NC_001650.1 + 167987 0.73 0.298865
Target:  5'- aUGGGGGCCCGGGGGuGG--GCCCAa- -3'
miRNA:   3'- -AUCCCUGGGUCCCCcUCaaCGGGUga -5'
3581 5' -61.7 NC_001650.1 + 167529 0.75 0.226918
Target:  5'- aUGGGGGCCC-GGGGGAGggcggcaGCCCGg- -3'
miRNA:   3'- -AUCCCUGGGuCCCCCUCaa-----CGGGUga -5'
3581 5' -61.7 NC_001650.1 + 167000 0.72 0.348423
Target:  5'- gAGGGcCCCgAGGGGGGGUUuCCCGg- -3'
miRNA:   3'- aUCCCuGGG-UCCCCCUCAAcGGGUga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.