Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3582 | 3' | -44.2 | NC_001650.1 | + | 5917 | 0.87 | 0.604566 |
Target: 5'- cCUAAUACCUAUGCAUgAGGGCcccGGg -3' miRNA: 3'- -GAUUAUGGAUACGUAaUCCCGuaaCC- -5' |
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3582 | 3' | -44.2 | NC_001650.1 | + | 6083 | 0.76 | 0.977955 |
Target: 5'- aCUAAUGCaUAUGCA-UAGGGUccAUUGGg -3' miRNA: 3'- -GAUUAUGgAUACGUaAUCCCG--UAACC- -5' |
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3582 | 3' | -44.2 | NC_001650.1 | + | 6205 | 0.76 | 0.980379 |
Target: 5'- aCUAAUGCaUAUGCAUguGGGCcUUGGg -3' miRNA: 3'- -GAUUAUGgAUACGUAauCCCGuAACC- -5' |
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3582 | 3' | -44.2 | NC_001650.1 | + | 6295 | 0.76 | 0.982599 |
Target: 5'- -cGAUGCaUAUGCAUcGGGGCcUUGGg -3' miRNA: 3'- gaUUAUGgAUACGUAaUCCCGuAACC- -5' |
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3582 | 3' | -44.2 | NC_001650.1 | + | 6428 | 0.73 | 0.997915 |
Target: 5'- aCUAAUGCaUAUGCAUgAGGGCcucGGg -3' miRNA: 3'- -GAUUAUGgAUACGUAaUCCCGuaaCC- -5' |
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3582 | 3' | -44.2 | NC_001650.1 | + | 6592 | 0.76 | 0.980379 |
Target: 5'- aCUAAUGCaUAUGCAUguGGGCcUUGGg -3' miRNA: 3'- -GAUUAUGgAUACGUAauCCCGuAACC- -5' |
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3582 | 3' | -44.2 | NC_001650.1 | + | 6703 | 1.15 | 0.022676 |
Target: 5'- aCUAAUACCUAUGCAUUAGGGCAUUGGg -3' miRNA: 3'- -GAUUAUGGAUACGUAAUCCCGUAACC- -5' |
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3582 | 3' | -44.2 | NC_001650.1 | + | 6823 | 0.85 | 0.703657 |
Target: 5'- -cAAUGCaUAUGCAUUaAGGGCAUUGGg -3' miRNA: 3'- gaUUAUGgAUACGUAA-UCCCGUAACC- -5' |
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3582 | 3' | -44.2 | NC_001650.1 | + | 6942 | 0.82 | 0.851034 |
Target: 5'- -gGGUGCUcacugcaUAUGCAUgAGGGCAUUGGg -3' miRNA: 3'- gaUUAUGG-------AUACGUAaUCCCGUAACC- -5' |
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3582 | 3' | -44.2 | NC_001650.1 | + | 7071 | 0.91 | 0.417173 |
Target: 5'- aCUGAUGCaUAUGCAUUAGGGCAUgGGg -3' miRNA: 3'- -GAUUAUGgAUACGUAAUCCCGUAaCC- -5' |
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3582 | 3' | -44.2 | NC_001650.1 | + | 7181 | 1.15 | 0.022012 |
Target: 5'- aCUGAUACCUAUGCAUUAGGGCAUUGGg -3' miRNA: 3'- -GAUUAUGGAUACGUAAUCCCGUAACC- -5' |
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3582 | 3' | -44.2 | NC_001650.1 | + | 7293 | 1.15 | 0.022012 |
Target: 5'- aCUGAUACCUAUGCAUUAGGGCAUUGGg -3' miRNA: 3'- -GAUUAUGGAUACGUAAUCCCGUAACC- -5' |
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3582 | 3' | -44.2 | NC_001650.1 | + | 7405 | 1 | 0.149623 |
Target: 5'- aCUAAUGCaUAUGCAUUAGGGCAUUGGg -3' miRNA: 3'- -GAUUAUGgAUACGUAAUCCCGUAACC- -5' |
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3582 | 3' | -44.2 | NC_001650.1 | + | 7643 | 0.73 | 0.996448 |
Target: 5'- -gGAUACUgcugcaUAUGCAUaGGGGCcUUGGg -3' miRNA: 3'- gaUUAUGG------AUACGUAaUCCCGuAACC- -5' |
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3582 | 3' | -44.2 | NC_001650.1 | + | 7756 | 0.72 | 0.999033 |
Target: 5'- -gGGUGCUcaauaaaUAUGCAUgAGGGCcUUGGg -3' miRNA: 3'- gaUUAUGG-------AUACGUAaUCCCGuAACC- -5' |
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3582 | 3' | -44.2 | NC_001650.1 | + | 8067 | 0.69 | 0.999954 |
Target: 5'- -aGAUGCaUAUGCAUagGGGGCGgucGGg -3' miRNA: 3'- gaUUAUGgAUACGUAa-UCCCGUaa-CC- -5' |
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3582 | 3' | -44.2 | NC_001650.1 | + | 8453 | 0.66 | 1 |
Target: 5'- --cAUGCaUAUGCAUUgcuagagggGGaGGCAUUGGc -3' miRNA: 3'- gauUAUGgAUACGUAA---------UC-CCGUAACC- -5' |
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3582 | 3' | -44.2 | NC_001650.1 | + | 18719 | 0.66 | 1 |
Target: 5'- uCUAAcACCUuuaccUGUAagGGGGCAUuUGGa -3' miRNA: 3'- -GAUUaUGGAu----ACGUaaUCCCGUA-ACC- -5' |
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3582 | 3' | -44.2 | NC_001650.1 | + | 37605 | 0.66 | 1 |
Target: 5'- ----cGCCUGUGCGccaugAGGGUGgaGGa -3' miRNA: 3'- gauuaUGGAUACGUaa---UCCCGUaaCC- -5' |
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3582 | 3' | -44.2 | NC_001650.1 | + | 54872 | 0.69 | 0.999938 |
Target: 5'- uUAGUACCUG-GCuuuUUAgGGGCGUgGGa -3' miRNA: 3'- gAUUAUGGAUaCGu--AAU-CCCGUAaCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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