miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3582 3' -44.2 NC_001650.1 + 7293 1.15 0.022012
Target:  5'- aCUGAUACCUAUGCAUUAGGGCAUUGGg -3'
miRNA:   3'- -GAUUAUGGAUACGUAAUCCCGUAACC- -5'
3582 3' -44.2 NC_001650.1 + 174000 1.15 0.022012
Target:  5'- aCUGAUACCUAUGCAUUAGGGCAUUGGg -3'
miRNA:   3'- -GAUUAUGGAUACGUAAUCCCGUAACC- -5'
3582 3' -44.2 NC_001650.1 + 7181 1.15 0.022012
Target:  5'- aCUGAUACCUAUGCAUUAGGGCAUUGGg -3'
miRNA:   3'- -GAUUAUGGAUACGUAAUCCCGUAACC- -5'
3582 3' -44.2 NC_001650.1 + 173888 1.15 0.022012
Target:  5'- aCUGAUACCUAUGCAUUAGGGCAUUGGg -3'
miRNA:   3'- -GAUUAUGGAUACGUAAUCCCGUAACC- -5'
3582 3' -44.2 NC_001650.1 + 6703 1.15 0.022676
Target:  5'- aCUAAUACCUAUGCAUUAGGGCAUUGGg -3'
miRNA:   3'- -GAUUAUGGAUACGUAAUCCCGUAACC- -5'
3582 3' -44.2 NC_001650.1 + 173410 1.15 0.022676
Target:  5'- aCUAAUACCUAUGCAUUAGGGCAUUGGg -3'
miRNA:   3'- -GAUUAUGGAUACGUAAUCCCGUAACC- -5'
3582 3' -44.2 NC_001650.1 + 7405 1 0.149623
Target:  5'- aCUAAUGCaUAUGCAUUAGGGCAUUGGg -3'
miRNA:   3'- -GAUUAUGgAUACGUAAUCCCGUAACC- -5'
3582 3' -44.2 NC_001650.1 + 174112 1 0.149623
Target:  5'- aCUAAUGCaUAUGCAUUAGGGCAUUGGg -3'
miRNA:   3'- -GAUUAUGgAUACGUAAUCCCGUAACC- -5'
3582 3' -44.2 NC_001650.1 + 173778 0.91 0.417173
Target:  5'- aCUGAUGCaUAUGCAUUAGGGCAUgGGg -3'
miRNA:   3'- -GAUUAUGgAUACGUAAUCCCGUAaCC- -5'
3582 3' -44.2 NC_001650.1 + 7071 0.91 0.417173
Target:  5'- aCUGAUGCaUAUGCAUUAGGGCAUgGGg -3'
miRNA:   3'- -GAUUAUGgAUACGUAAUCCCGUAaCC- -5'
3582 3' -44.2 NC_001650.1 + 5917 0.87 0.604566
Target:  5'- cCUAAUACCUAUGCAUgAGGGCcccGGg -3'
miRNA:   3'- -GAUUAUGGAUACGUAaUCCCGuaaCC- -5'
3582 3' -44.2 NC_001650.1 + 172624 0.87 0.604566
Target:  5'- cCUAAUACCUAUGCAUgAGGGCcccGGg -3'
miRNA:   3'- -GAUUAUGGAUACGUAaUCCCGuaaCC- -5'
3582 3' -44.2 NC_001650.1 + 173530 0.85 0.703657
Target:  5'- -cAAUGCaUAUGCAUUaAGGGCAUUGGg -3'
miRNA:   3'- gaUUAUGgAUACGUAA-UCCCGUAACC- -5'
3582 3' -44.2 NC_001650.1 + 6823 0.85 0.703657
Target:  5'- -cAAUGCaUAUGCAUUaAGGGCAUUGGg -3'
miRNA:   3'- gaUUAUGgAUACGUAA-UCCCGUAACC- -5'
3582 3' -44.2 NC_001650.1 + 173649 0.82 0.851034
Target:  5'- -gGGUGCUcacugcaUAUGCAUgAGGGCAUUGGg -3'
miRNA:   3'- gaUUAUGG-------AUACGUAaUCCCGUAACC- -5'
3582 3' -44.2 NC_001650.1 + 6942 0.82 0.851034
Target:  5'- -gGGUGCUcacugcaUAUGCAUgAGGGCAUUGGg -3'
miRNA:   3'- gaUUAUGG-------AUACGUAaUCCCGUAACC- -5'
3582 3' -44.2 NC_001650.1 + 6083 0.76 0.977955
Target:  5'- aCUAAUGCaUAUGCA-UAGGGUccAUUGGg -3'
miRNA:   3'- -GAUUAUGgAUACGUaAUCCCG--UAACC- -5'
3582 3' -44.2 NC_001650.1 + 172790 0.76 0.977955
Target:  5'- aCUAAUGCaUAUGCA-UAGGGUccAUUGGg -3'
miRNA:   3'- -GAUUAUGgAUACGUaAUCCCG--UAACC- -5'
3582 3' -44.2 NC_001650.1 + 173299 0.76 0.980379
Target:  5'- aCUAAUGCaUAUGCAUguGGGCcUUGGg -3'
miRNA:   3'- -GAUUAUGgAUACGUAauCCCGuAACC- -5'
3582 3' -44.2 NC_001650.1 + 172912 0.76 0.980379
Target:  5'- aCUAAUGCaUAUGCAUguGGGCcUUGGg -3'
miRNA:   3'- -GAUUAUGgAUACGUAauCCCGuAACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.