miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3582 3' -44.2 NC_001650.1 + 6592 0.76 0.980379
Target:  5'- aCUAAUGCaUAUGCAUguGGGCcUUGGg -3'
miRNA:   3'- -GAUUAUGgAUACGUAauCCCGuAACC- -5'
3582 3' -44.2 NC_001650.1 + 6205 0.76 0.980379
Target:  5'- aCUAAUGCaUAUGCAUguGGGCcUUGGg -3'
miRNA:   3'- -GAUUAUGgAUACGUAauCCCGuAACC- -5'
3582 3' -44.2 NC_001650.1 + 6295 0.76 0.982599
Target:  5'- -cGAUGCaUAUGCAUcGGGGCcUUGGg -3'
miRNA:   3'- gaUUAUGgAUACGUAaUCCCGuAACC- -5'
3582 3' -44.2 NC_001650.1 + 173002 0.76 0.982599
Target:  5'- -cGAUGCaUAUGCAUcGGGGCcUUGGg -3'
miRNA:   3'- gaUUAUGgAUACGUAaUCCCGuAACC- -5'
3582 3' -44.2 NC_001650.1 + 7643 0.73 0.996448
Target:  5'- -gGAUACUgcugcaUAUGCAUaGGGGCcUUGGg -3'
miRNA:   3'- gaUUAUGG------AUACGUAaUCCCGuAACC- -5'
3582 3' -44.2 NC_001650.1 + 174350 0.73 0.996448
Target:  5'- -gGAUACUgcugcaUAUGCAUaGGGGCcUUGGg -3'
miRNA:   3'- gaUUAUGG------AUACGUAaUCCCGuAACC- -5'
3582 3' -44.2 NC_001650.1 + 173135 0.73 0.997915
Target:  5'- aCUAAUGCaUAUGCAUgAGGGCcucGGg -3'
miRNA:   3'- -GAUUAUGgAUACGUAaUCCCGuaaCC- -5'
3582 3' -44.2 NC_001650.1 + 6428 0.73 0.997915
Target:  5'- aCUAAUGCaUAUGCAUgAGGGCcucGGg -3'
miRNA:   3'- -GAUUAUGgAUACGUAaUCCCGuaaCC- -5'
3582 3' -44.2 NC_001650.1 + 7756 0.72 0.999033
Target:  5'- -gGGUGCUcaauaaaUAUGCAUgAGGGCcUUGGg -3'
miRNA:   3'- gaUUAUGG-------AUACGUAaUCCCGuAACC- -5'
3582 3' -44.2 NC_001650.1 + 54872 0.69 0.999938
Target:  5'- uUAGUACCUG-GCuuuUUAgGGGCGUgGGa -3'
miRNA:   3'- gAUUAUGGAUaCGu--AAU-CCCGUAaCC- -5'
3582 3' -44.2 NC_001650.1 + 8067 0.69 0.999954
Target:  5'- -aGAUGCaUAUGCAUagGGGGCGgucGGg -3'
miRNA:   3'- gaUUAUGgAUACGUAa-UCCCGUaa-CC- -5'
3582 3' -44.2 NC_001650.1 + 174774 0.69 0.999954
Target:  5'- -aGAUGCaUAUGCAUagGGGGCGgucGGg -3'
miRNA:   3'- gaUUAUGgAUACGUAa-UCCCGUaa-CC- -5'
3582 3' -44.2 NC_001650.1 + 63953 0.69 0.999975
Target:  5'- ---cUGCCUAUuuuugGCAUgguGGGCuAUUGGg -3'
miRNA:   3'- gauuAUGGAUA-----CGUAau-CCCG-UAACC- -5'
3582 3' -44.2 NC_001650.1 + 98633 0.69 0.999982
Target:  5'- aUAGUGCaCUGUGUugUGGGGCAc--- -3'
miRNA:   3'- gAUUAUG-GAUACGuaAUCCCGUaacc -5'
3582 3' -44.2 NC_001650.1 + 76589 0.68 0.999987
Target:  5'- ----gGCCUGgccGCAgcucAGGGUGUUGGa -3'
miRNA:   3'- gauuaUGGAUa--CGUaa--UCCCGUAACC- -5'
3582 3' -44.2 NC_001650.1 + 57561 0.68 0.999991
Target:  5'- ----gGCCUGUGguUgcagcugcggcUGGGGCAggGGu -3'
miRNA:   3'- gauuaUGGAUACguA-----------AUCCCGUaaCC- -5'
3582 3' -44.2 NC_001650.1 + 101105 0.68 0.999991
Target:  5'- ---cUGCuCUAUGCAgaAGGGCuucgGGg -3'
miRNA:   3'- gauuAUG-GAUACGUaaUCCCGuaa-CC- -5'
3582 3' -44.2 NC_001650.1 + 174490 0.68 0.999991
Target:  5'- --uGUGCCUGUGguUgccGGGCAgacuagGGg -3'
miRNA:   3'- gauUAUGGAUACguAau-CCCGUaa----CC- -5'
3582 3' -44.2 NC_001650.1 + 89268 0.68 0.999996
Target:  5'- ----gGCCUGUGCccagAGGGCAg--- -3'
miRNA:   3'- gauuaUGGAUACGuaa-UCCCGUaacc -5'
3582 3' -44.2 NC_001650.1 + 136673 0.67 0.999998
Target:  5'- gCUGAUGcgggcCCUGUGCG--AGGGCcugcgcgUGGg -3'
miRNA:   3'- -GAUUAU-----GGAUACGUaaUCCCGua-----ACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.