Results 1 - 20 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3583 | 3' | -47.5 | NC_001650.1 | + | 174200 | 0.66 | 0.999808 |
Target: 5'- gGUGUGGGagaUAgUGGGUAGCc--CCCa -3' miRNA: 3'- aCAUACUCg--GUaACCCAUUGauaGGG- -5' |
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3583 | 3' | -47.5 | NC_001650.1 | + | 7133 | 0.67 | 0.999596 |
Target: 5'- ---cUGAGCCcccAUUGGGUaugggagauagugGACaGUCCCc -3' miRNA: 3'- acauACUCGG---UAACCCA-------------UUGaUAGGG- -5' |
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3583 | 3' | -47.5 | NC_001650.1 | + | 173840 | 0.67 | 0.999596 |
Target: 5'- ---cUGAGCCcccAUUGGGUaugggagauagugGACaGUCCCc -3' miRNA: 3'- acauACUCGG---UAACCCA-------------UUGaUAGGG- -5' |
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3583 | 3' | -47.5 | NC_001650.1 | + | 7837 | 0.67 | 0.999605 |
Target: 5'- ---uUGGGCCAcUGGGUGcAUgg-CCCg -3' miRNA: 3'- acauACUCGGUaACCCAU-UGauaGGG- -5' |
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3583 | 3' | -47.5 | NC_001650.1 | + | 174544 | 0.67 | 0.999605 |
Target: 5'- ---uUGGGCCAcUGGGUGcAUgg-CCCg -3' miRNA: 3'- acauACUCGGUaACCCAU-UGauaGGG- -5' |
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3583 | 3' | -47.5 | NC_001650.1 | + | 129219 | 0.67 | 0.999687 |
Target: 5'- gGUGgagggGGGUCGagGGGaAGCUGUCCg -3' miRNA: 3'- aCAUa----CUCGGUaaCCCaUUGAUAGGg -5' |
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3583 | 3' | -47.5 | NC_001650.1 | + | 37713 | 0.67 | 0.999754 |
Target: 5'- cGg--GuGCCcgUGGGccAGCUGUCCUu -3' miRNA: 3'- aCauaCuCGGuaACCCa-UUGAUAGGG- -5' |
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3583 | 3' | -47.5 | NC_001650.1 | + | 156455 | 0.67 | 0.999754 |
Target: 5'- --cGUGAGCCug-GGGgcagAAgUGUCCa -3' miRNA: 3'- acaUACUCGGuaaCCCa---UUgAUAGGg -5' |
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3583 | 3' | -47.5 | NC_001650.1 | + | 7493 | 0.66 | 0.999808 |
Target: 5'- gGUGUGGGagaUAgUGGGUAGCc--CCCa -3' miRNA: 3'- aCAUACUCg--GUaACCCAUUGauaGGG- -5' |
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3583 | 3' | -47.5 | NC_001650.1 | + | 173068 | 0.68 | 0.999384 |
Target: 5'- ---uUGGGCCuUUGGGaUAAUUA-CCCa -3' miRNA: 3'- acauACUCGGuAACCC-AUUGAUaGGG- -5' |
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3583 | 3' | -47.5 | NC_001650.1 | + | 172904 | 0.68 | 0.999384 |
Target: 5'- ---uUGGGCCuUUGGGaUAAUUA-CCCg -3' miRNA: 3'- acauACUCGGuAACCC-AUUGAUaGGG- -5' |
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3583 | 3' | -47.5 | NC_001650.1 | + | 172681 | 0.68 | 0.999384 |
Target: 5'- ---uUGGGCCuUUGGGaUAAUUA-CCCa -3' miRNA: 3'- acauACUCGGuAACCC-AUUGAUaGGG- -5' |
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3583 | 3' | -47.5 | NC_001650.1 | + | 172559 | 0.77 | 0.877574 |
Target: 5'- ---uUGGGCCAUUGGGaUAAUUA-CCCa -3' miRNA: 3'- acauACUCGGUAACCC-AUUGAUaGGG- -5' |
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3583 | 3' | -47.5 | NC_001650.1 | + | 100005 | 0.74 | 0.949403 |
Target: 5'- -aUGUGAGUCAUUGGaGUcGACUccaaaGUCCCu -3' miRNA: 3'- acAUACUCGGUAACC-CA-UUGA-----UAGGG- -5' |
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3583 | 3' | -47.5 | NC_001650.1 | + | 63970 | 0.72 | 0.985581 |
Target: 5'- --gGUGGGCUAUUGGGgggcgagGGCUugcaacgcccuAUCCCu -3' miRNA: 3'- acaUACUCGGUAACCCa------UUGA-----------UAGGG- -5' |
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3583 | 3' | -47.5 | NC_001650.1 | + | 145144 | 0.69 | 0.997974 |
Target: 5'- ----aGAGCCcccgGGGUAACUcccuuUCCCc -3' miRNA: 3'- acauaCUCGGuaa-CCCAUUGAu----AGGG- -5' |
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3583 | 3' | -47.5 | NC_001650.1 | + | 20745 | 0.68 | 0.999237 |
Target: 5'- --cAUGGGCCAUuaucacccuUGuGGUGAUUAUCUUg -3' miRNA: 3'- acaUACUCGGUA---------AC-CCAUUGAUAGGG- -5' |
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3583 | 3' | -47.5 | NC_001650.1 | + | 90543 | 0.68 | 0.999328 |
Target: 5'- --cAUGAGCCcg-GGGUAGCggggcugcgugCCCu -3' miRNA: 3'- acaUACUCGGuaaCCCAUUGaua--------GGG- -5' |
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3583 | 3' | -47.5 | NC_001650.1 | + | 6197 | 0.68 | 0.999384 |
Target: 5'- ---uUGGGCCuUUGGGaUAAUUA-CCCg -3' miRNA: 3'- acauACUCGGuAACCC-AUUGAUaGGG- -5' |
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3583 | 3' | -47.5 | NC_001650.1 | + | 6361 | 0.68 | 0.999384 |
Target: 5'- ---uUGGGCCuUUGGGaUAAUUA-CCCa -3' miRNA: 3'- acauACUCGGuAACCC-AUUGAUaGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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