miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3583 3' -47.5 NC_001650.1 + 5852 0.77 0.877574
Target:  5'- ---uUGGGCCAUUGGGaUAAUUA-CCCa -3'
miRNA:   3'- acauACUCGGUAACCC-AUUGAUaGGG- -5'
3583 3' -47.5 NC_001650.1 + 5874 0.67 0.999605
Target:  5'- ----aGGGCCAaUGGG-GGCUA-CCCa -3'
miRNA:   3'- acauaCUCGGUaACCCaUUGAUaGGG- -5'
3583 3' -47.5 NC_001650.1 + 5975 0.66 0.999912
Target:  5'- ---uUGGGCCuUUGGGaAAUUA-CCCa -3'
miRNA:   3'- acauACUCGGuAACCCaUUGAUaGGG- -5'
3583 3' -47.5 NC_001650.1 + 6067 0.85 0.468848
Target:  5'- ----aGGGuCCAUUGGGUAAUUAUCCCa -3'
miRNA:   3'- acauaCUC-GGUAACCCAUUGAUAGGG- -5'
3583 3' -47.5 NC_001650.1 + 6191 0.9 0.275861
Target:  5'- -aUGUGGGCC-UUGGGUAAUUAUCCCa -3'
miRNA:   3'- acAUACUCGGuAACCCAUUGAUAGGG- -5'
3583 3' -47.5 NC_001650.1 + 6197 0.68 0.999384
Target:  5'- ---uUGGGCCuUUGGGaUAAUUA-CCCg -3'
miRNA:   3'- acauACUCGGuAACCC-AUUGAUaGGG- -5'
3583 3' -47.5 NC_001650.1 + 6361 0.68 0.999384
Target:  5'- ---uUGGGCCuUUGGGaUAAUUA-CCCa -3'
miRNA:   3'- acauACUCGGuAACCC-AUUGAUaGGG- -5'
3583 3' -47.5 NC_001650.1 + 6411 0.77 0.853939
Target:  5'- ----aGGGCCuc-GGGUAAUUAUCCCa -3'
miRNA:   3'- acauaCUCGGuaaCCCAUUGAUAGGG- -5'
3583 3' -47.5 NC_001650.1 + 6578 0.9 0.275861
Target:  5'- -aUGUGGGCC-UUGGGUAAUUAUCCCa -3'
miRNA:   3'- acAUACUCGGuAACCCAUUGAUAGGG- -5'
3583 3' -47.5 NC_001650.1 + 7020 0.92 0.231248
Target:  5'- gGUGgcagGGGCC-UUGGGUAACUAUCCCa -3'
miRNA:   3'- aCAUa---CUCGGuAACCCAUUGAUAGGG- -5'
3583 3' -47.5 NC_001650.1 + 7133 0.67 0.999596
Target:  5'- ---cUGAGCCcccAUUGGGUaugggagauagugGACaGUCCCc -3'
miRNA:   3'- acauACUCGG---UAACCCA-------------UUGaUAGGG- -5'
3583 3' -47.5 NC_001650.1 + 7493 0.66 0.999808
Target:  5'- gGUGUGGGagaUAgUGGGUAGCc--CCCa -3'
miRNA:   3'- aCAUACUCg--GUaACCCAUUGauaGGG- -5'
3583 3' -47.5 NC_001650.1 + 7505 1.15 0.009871
Target:  5'- aUGUAUGAGCCAUUGGGUAACUAUCCCg -3'
miRNA:   3'- -ACAUACUCGGUAACCCAUUGAUAGGG- -5'
3583 3' -47.5 NC_001650.1 + 7601 0.69 0.996588
Target:  5'- --cGUGGcCCAaUGGG-GGCUGUCCCa -3'
miRNA:   3'- acaUACUcGGUaACCCaUUGAUAGGG- -5'
3583 3' -47.5 NC_001650.1 + 7837 0.67 0.999605
Target:  5'- ---uUGGGCCAcUGGGUGcAUgg-CCCg -3'
miRNA:   3'- acauACUCGGUaACCCAU-UGauaGGG- -5'
3583 3' -47.5 NC_001650.1 + 8517 0.71 0.990228
Target:  5'- gUGUGUGGGUgG-UGGGcuACUGUCCa -3'
miRNA:   3'- -ACAUACUCGgUaACCCauUGAUAGGg -5'
3583 3' -47.5 NC_001650.1 + 12324 0.68 0.99883
Target:  5'- gGUGUGuGCCAgggggguUUGGGguggGGCcAUCCUc -3'
miRNA:   3'- aCAUACuCGGU-------AACCCa---UUGaUAGGG- -5'
3583 3' -47.5 NC_001650.1 + 16772 0.69 0.998315
Target:  5'- gUGgGUGGGCCuaugauguauuaGUUGGGUGGCcAUCUUg -3'
miRNA:   3'- -ACaUACUCGG------------UAACCCAUUGaUAGGG- -5'
3583 3' -47.5 NC_001650.1 + 19430 0.66 0.999851
Target:  5'- aGUAgaccgaGGGCCugcuGUUGGGgugAGCUGUggaCCCa -3'
miRNA:   3'- aCAUa-----CUCGG----UAACCCa--UUGAUA---GGG- -5'
3583 3' -47.5 NC_001650.1 + 20745 0.68 0.999237
Target:  5'- --cAUGGGCCAUuaucacccuUGuGGUGAUUAUCUUg -3'
miRNA:   3'- acaUACUCGGUA---------AC-CCAUUGAUAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.