miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3583 3' -47.5 NC_001650.1 + 21016 0.68 0.999003
Target:  5'- cUGUGUGAGUUAaaacaUGGGacccauacagcaguUAACUAUCCa -3'
miRNA:   3'- -ACAUACUCGGUa----ACCC--------------AUUGAUAGGg -5'
3583 3' -47.5 NC_001650.1 + 37713 0.67 0.999754
Target:  5'- cGg--GuGCCcgUGGGccAGCUGUCCUu -3'
miRNA:   3'- aCauaCuCGGuaACCCa-UUGAUAGGG- -5'
3583 3' -47.5 NC_001650.1 + 47450 0.66 0.999934
Target:  5'- gUGUuuaggGAGCgAggGGGUAGCUgcgaggGUCUCu -3'
miRNA:   3'- -ACAua---CUCGgUaaCCCAUUGA------UAGGG- -5'
3583 3' -47.5 NC_001650.1 + 53799 0.68 0.999062
Target:  5'- cGgg-GAGCCAaucagaGGcUAGCUGUCCCu -3'
miRNA:   3'- aCauaCUCGGUaa----CCcAUUGAUAGGG- -5'
3583 3' -47.5 NC_001650.1 + 63970 0.72 0.985581
Target:  5'- --gGUGGGCUAUUGGGgggcgagGGCUugcaacgcccuAUCCCu -3'
miRNA:   3'- acaUACUCGGUAACCCa------UUGA-----------UAGGG- -5'
3583 3' -47.5 NC_001650.1 + 73178 0.68 0.999237
Target:  5'- cGUAcUGGGCCA-UGGGgGACUuGUgCCa -3'
miRNA:   3'- aCAU-ACUCGGUaACCCaUUGA-UAgGG- -5'
3583 3' -47.5 NC_001650.1 + 75520 0.66 0.999851
Target:  5'- cGUccGcGGCCGcaggGGGgcGCUGUUCCa -3'
miRNA:   3'- aCAuaC-UCGGUaa--CCCauUGAUAGGG- -5'
3583 3' -47.5 NC_001650.1 + 86225 0.68 0.998606
Target:  5'- aGUAUGAGCagcacGGGUAucucgcaggcGCUGUCUa -3'
miRNA:   3'- aCAUACUCGguaa-CCCAU----------UGAUAGGg -5'
3583 3' -47.5 NC_001650.1 + 90543 0.68 0.999328
Target:  5'- --cAUGAGCCcg-GGGUAGCggggcugcgugCCCu -3'
miRNA:   3'- acaUACUCGGuaaCCCAUUGaua--------GGG- -5'
3583 3' -47.5 NC_001650.1 + 100005 0.74 0.949403
Target:  5'- -aUGUGAGUCAUUGGaGUcGACUccaaaGUCCCu -3'
miRNA:   3'- acAUACUCGGUAACC-CA-UUGA-----UAGGG- -5'
3583 3' -47.5 NC_001650.1 + 101017 0.76 0.892131
Target:  5'- cUGUGUGcGCCGUccUGGGcGACUAucacaUCCCg -3'
miRNA:   3'- -ACAUACuCGGUA--ACCCaUUGAU-----AGGG- -5'
3583 3' -47.5 NC_001650.1 + 111389 0.67 0.999605
Target:  5'- ---cUGAGCCGccUGGGccUGACUGggaCCCg -3'
miRNA:   3'- acauACUCGGUa-ACCC--AUUGAUa--GGG- -5'
3583 3' -47.5 NC_001650.1 + 122458 0.67 0.999605
Target:  5'- gGUGagGAGCUcgUGGGgcAcCUcgCCCc -3'
miRNA:   3'- aCAUa-CUCGGuaACCCauU-GAuaGGG- -5'
3583 3' -47.5 NC_001650.1 + 129219 0.67 0.999687
Target:  5'- gGUGgagggGGGUCGagGGGaAGCUGUCCg -3'
miRNA:   3'- aCAUa----CUCGGUaaCCCaUUGAUAGGg -5'
3583 3' -47.5 NC_001650.1 + 145144 0.69 0.997974
Target:  5'- ----aGAGCCcccgGGGUAACUcccuuUCCCc -3'
miRNA:   3'- acauaCUCGGuaa-CCCAUUGAu----AGGG- -5'
3583 3' -47.5 NC_001650.1 + 156455 0.67 0.999754
Target:  5'- --cGUGAGCCug-GGGgcagAAgUGUCCa -3'
miRNA:   3'- acaUACUCGGuaaCCCa---UUgAUAGGg -5'
3583 3' -47.5 NC_001650.1 + 165991 0.67 0.999605
Target:  5'- aGUGUGuGUgGggGGGUGuaggagaUGUCCCa -3'
miRNA:   3'- aCAUACuCGgUaaCCCAUug-----AUAGGG- -5'
3583 3' -47.5 NC_001650.1 + 172559 0.77 0.877574
Target:  5'- ---uUGGGCCAUUGGGaUAAUUA-CCCa -3'
miRNA:   3'- acauACUCGGUAACCC-AUUGAUaGGG- -5'
3583 3' -47.5 NC_001650.1 + 172581 0.67 0.999605
Target:  5'- ----aGGGCCAaUGGG-GGCUA-CCCa -3'
miRNA:   3'- acauaCUCGGUaACCCaUUGAUaGGG- -5'
3583 3' -47.5 NC_001650.1 + 172681 0.68 0.999384
Target:  5'- ---uUGGGCCuUUGGGaUAAUUA-CCCa -3'
miRNA:   3'- acauACUCGGuAACCC-AUUGAUaGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.