miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3583 3' -47.5 NC_001650.1 + 183479 0.68 0.998579
Target:  5'- gUGgGUGGGCCcuaugauguauuaGUUGGGUGGCcAUCUUg -3'
miRNA:   3'- -ACaUACUCGG-------------UAACCCAUUGaUAGGG- -5'
3583 3' -47.5 NC_001650.1 + 179031 0.68 0.99883
Target:  5'- gGUGUGuGCCAgggggguUUGGGguggGGCcAUCCUc -3'
miRNA:   3'- aCAUACuCGGU-------AACCCa---UUGaUAGGG- -5'
3583 3' -47.5 NC_001650.1 + 175224 0.71 0.990228
Target:  5'- gUGUGUGGGUgG-UGGGcuACUGUCCa -3'
miRNA:   3'- -ACAUACUCGgUaACCCauUGAUAGGg -5'
3583 3' -47.5 NC_001650.1 + 174544 0.67 0.999605
Target:  5'- ---uUGGGCCAcUGGGUGcAUgg-CCCg -3'
miRNA:   3'- acauACUCGGUaACCCAU-UGauaGGG- -5'
3583 3' -47.5 NC_001650.1 + 174308 0.69 0.996588
Target:  5'- --cGUGGcCCAaUGGG-GGCUGUCCCa -3'
miRNA:   3'- acaUACUcGGUaACCCaUUGAUAGGG- -5'
3583 3' -47.5 NC_001650.1 + 174212 1.15 0.009871
Target:  5'- aUGUAUGAGCCAUUGGGUAACUAUCCCg -3'
miRNA:   3'- -ACAUACUCGGUAACCCAUUGAUAGGG- -5'
3583 3' -47.5 NC_001650.1 + 174200 0.66 0.999808
Target:  5'- gGUGUGGGagaUAgUGGGUAGCc--CCCa -3'
miRNA:   3'- aCAUACUCg--GUaACCCAUUGauaGGG- -5'
3583 3' -47.5 NC_001650.1 + 173840 0.67 0.999596
Target:  5'- ---cUGAGCCcccAUUGGGUaugggagauagugGACaGUCCCc -3'
miRNA:   3'- acauACUCGG---UAACCCA-------------UUGaUAGGG- -5'
3583 3' -47.5 NC_001650.1 + 173727 0.92 0.231248
Target:  5'- gGUGgcagGGGCC-UUGGGUAACUAUCCCa -3'
miRNA:   3'- aCAUa---CUCGGuAACCCAUUGAUAGGG- -5'
3583 3' -47.5 NC_001650.1 + 173285 0.9 0.275861
Target:  5'- -aUGUGGGCC-UUGGGUAAUUAUCCCa -3'
miRNA:   3'- acAUACUCGGuAACCCAUUGAUAGGG- -5'
3583 3' -47.5 NC_001650.1 + 173118 0.77 0.853939
Target:  5'- ----aGGGCCuc-GGGUAAUUAUCCCa -3'
miRNA:   3'- acauaCUCGGuaaCCCAUUGAUAGGG- -5'
3583 3' -47.5 NC_001650.1 + 173068 0.68 0.999384
Target:  5'- ---uUGGGCCuUUGGGaUAAUUA-CCCa -3'
miRNA:   3'- acauACUCGGuAACCC-AUUGAUaGGG- -5'
3583 3' -47.5 NC_001650.1 + 172904 0.68 0.999384
Target:  5'- ---uUGGGCCuUUGGGaUAAUUA-CCCg -3'
miRNA:   3'- acauACUCGGuAACCC-AUUGAUaGGG- -5'
3583 3' -47.5 NC_001650.1 + 172898 0.9 0.275861
Target:  5'- -aUGUGGGCC-UUGGGUAAUUAUCCCa -3'
miRNA:   3'- acAUACUCGGuAACCCAUUGAUAGGG- -5'
3583 3' -47.5 NC_001650.1 + 172774 0.85 0.468848
Target:  5'- ----aGGGuCCAUUGGGUAAUUAUCCCa -3'
miRNA:   3'- acauaCUC-GGUAACCCAUUGAUAGGG- -5'
3583 3' -47.5 NC_001650.1 + 172681 0.68 0.999384
Target:  5'- ---uUGGGCCuUUGGGaUAAUUA-CCCa -3'
miRNA:   3'- acauACUCGGuAACCC-AUUGAUaGGG- -5'
3583 3' -47.5 NC_001650.1 + 172581 0.67 0.999605
Target:  5'- ----aGGGCCAaUGGG-GGCUA-CCCa -3'
miRNA:   3'- acauaCUCGGUaACCCaUUGAUaGGG- -5'
3583 3' -47.5 NC_001650.1 + 172559 0.77 0.877574
Target:  5'- ---uUGGGCCAUUGGGaUAAUUA-CCCa -3'
miRNA:   3'- acauACUCGGUAACCC-AUUGAUaGGG- -5'
3583 3' -47.5 NC_001650.1 + 165991 0.67 0.999605
Target:  5'- aGUGUGuGUgGggGGGUGuaggagaUGUCCCa -3'
miRNA:   3'- aCAUACuCGgUaaCCCAUug-----AUAGGG- -5'
3583 3' -47.5 NC_001650.1 + 156455 0.67 0.999754
Target:  5'- --cGUGAGCCug-GGGgcagAAgUGUCCa -3'
miRNA:   3'- acaUACUCGGuaaCCCa---UUgAUAGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.